Functional clusters

Information

  • Type Gene Ontology
  • Description cellular catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr19 3 CH_mbi_237 11 30 0.000000302387
Phyllostachys edulis hic_scaffold_13 3 CH_ped_500 9 23 0.000788534
Magnolia biondii Chr19 4 CH_mbi_237 11 30 0.000000302387
Phyllostachys edulis hic_scaffold_13 4 CH_ped_500 9 23 0.000788534

Available child term results

Ontology identifier Description Number of clusters
GO:0000045 autophagosome assembly 4
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
GO:0000256 allantoin catabolic process 2
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0000292 RNA fragment catabolic process 2
GO:0000422 autophagy of mitochondrion 4
GO:0000737 DNA catabolic process, endonucleolytic 20
GO:0000738 DNA catabolic process, exonucleolytic 6
GO:0001561 fatty acid alpha-oxidation 8
GO:0005983 starch catabolic process 2
GO:0005987 sucrose catabolic process 6
GO:0005993 trehalose catabolic process 4
GO:0006148 inosine catabolic process 4
GO:0006154 adenosine catabolic process 60
GO:0006210 thymine catabolic process 2
GO:0006218 uridine catabolic process 8
GO:0006308 DNA catabolic process 30
GO:0006511 ubiquitin-dependent protein catabolic process 114
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 2
GO:0006516 glycoprotein catabolic process 4
GO:0006559 L-phenylalanine catabolic process 6
GO:0006562 proline catabolic process 2
GO:0006569 tryptophan catabolic process 8
GO:0006572 tyrosine catabolic process 16
GO:0006574 valine catabolic process 14
GO:0006635 fatty acid beta-oxidation 2
GO:0006680 glucosylceramide catabolic process 2
GO:0006788 heme oxidation 18
GO:0006914 autophagy 6
GO:0009063 cellular amino acid catabolic process 2
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009143 nucleoside triphosphate catabolic process 6
GO:0009166 nucleotide catabolic process 2
GO:0009395 phospholipid catabolic process 4
GO:0009407 toxin catabolic process 20
GO:0009440 cyanate catabolic process 2
GO:0009972 cytidine deamination 2
GO:0010133 proline catabolic process to glutamate 4
GO:0010271 regulation of chlorophyll catabolic process 2
GO:0010506 regulation of autophagy 4
GO:0010507 negative regulation of autophagy 2
GO:0010587 miRNA catabolic process 2
GO:0010896 regulation of triglyceride catabolic process 4
GO:0015938 coenzyme A catabolic process 2
GO:0016075 rRNA catabolic process 6
GO:0016121 carotene catabolic process 2
GO:0016124 xanthophyll catabolic process 12
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 2
GO:0019310 inositol catabolic process 24
GO:0019433 triglyceride catabolic process 4
GO:0019450 L-cysteine catabolic process to pyruvate 36
GO:0019481 L-alanine catabolic process, by transamination 30
GO:0019500 cyanide catabolic process 2
GO:0019544 arginine catabolic process to glutamate 2
GO:0019677 NAD catabolic process 4
GO:0019941 modification-dependent protein catabolic process 2
GO:0030242 autophagy of peroxisome 4
GO:0030245 cellulose catabolic process 10
GO:0030327 prenylated protein catabolic process 4
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 4
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 2
GO:0032000 positive regulation of fatty acid beta-oxidation 2
GO:0033355 ascorbate glutathione cycle 10
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 14
GO:0034263 positive regulation of autophagy in response to ER overload 6
GO:0034655 nucleobase-containing compound catabolic process 2
GO:0042178 xenobiotic catabolic process 6
GO:0042183 formate catabolic process 2
GO:0042744 hydrogen peroxide catabolic process 420
GO:0042758 long-chain fatty acid catabolic process 8
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 4
GO:0043419 urea catabolic process 6
GO:0043488 regulation of mRNA stability 2
GO:0043632 modification-dependent macromolecule catabolic process 18
GO:0044242 cellular lipid catabolic process 2
GO:0044257 cellular protein catabolic process 2
GO:0044265 cellular macromolecule catabolic process 6
GO:0044273 sulfur compound catabolic process 2
GO:0045339 farnesyl diphosphate catabolic process 8
GO:0045487 gibberellin catabolic process 2
GO:0045493 xylan catabolic process 42
GO:0046244 salicylic acid catabolic process 8
GO:0046256 2,4,6-trinitrotoluene catabolic process 8
GO:0046340 diacylglycerol catabolic process 2
GO:0046345 abscisic acid catabolic process 8
GO:0046395 carboxylic acid catabolic process 4
GO:0046466 membrane lipid catabolic process 2
GO:0046514 ceramide catabolic process 4
GO:0046700 heterocycle catabolic process 2
GO:0048255 mRNA stabilization 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 4
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 16
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071211 protein targeting to vacuole involved in autophagy 6
GO:0071562 nucleus-vacuole junction assembly 2
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 10
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901799 negative regulation of proteasomal protein catabolic process 6
GO:1901811 beta-carotene catabolic process 6
GO:1903647 negative regulation of chlorophyll catabolic process 6
GO:1904292 regulation of ERAD pathway 4
GO:1904294 positive regulation of ERAD pathway 8
GO:1905037 autophagosome organization 2
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 8
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001294 malonyl-CoA catabolic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001