Functional clusters

Information

  • Type Gene Ontology
  • Description reproductive process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus A10 3 CH_bna_476 15 50 0.000133017
Brassica oleracea C9 3 CH_bol_231 19 75 0.0000219263
Brassica rapa A10 3 CH_bra_229 19 68 0.000241898
Erigeron canadensis Conyza_canadensis_scaffold:8 3 CH_eca_434 9 18 0.00054535
Physcomitrium patens Chr07 3 CH_ppa_60 18 40 0.00000410351
Brassica napus A10 4 CH_bna_476 15 50 0.000133017
Brassica oleracea C9 4 CH_bol_231 19 75 0.0000219263
Brassica rapa A10 4 CH_bra_229 19 68 0.000241898
Erigeron canadensis Conyza_canadensis_scaffold:8 4 CH_eca_434 9 18 0.00054535
Physcomitrium patens Chr07 4 CH_ppa_60 18 40 0.00000410351

Available child term results

Ontology identifier Description Number of clusters
GO:0000212 meiotic spindle organization 4
GO:0000706 meiotic DNA double-strand break processing 4
GO:0000712 resolution of meiotic recombination intermediates 2
GO:0003006 developmental process involved in reproduction 6
GO:0006279 premeiotic DNA replication 6
GO:0007060 male meiosis chromosome segregation 4
GO:0007065 male meiosis sister chromatid cohesion 4
GO:0007130 synaptonemal complex assembly 4
GO:0007131 reciprocal meiotic recombination 8
GO:0007135 meiosis II 6
GO:0007140 male meiotic nuclear division 2
GO:0007141 male meiosis I 4
GO:0007142 male meiosis II 6
GO:0007143 female meiotic nuclear division 2
GO:0007276 gamete generation 2
GO:0007292 female gamete generation 2
GO:0007338 single fertilization 2
GO:0009556 microsporogenesis 2
GO:0009567 double fertilization forming a zygote and endosperm 82
GO:0009793 embryo development ending in seed dormancy 26
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009835 fruit ripening 2
GO:0009846 pollen germination 2
GO:0009859 pollen hydration 12
GO:0009860 pollen tube growth 14
GO:0009875 pollen-pistil interaction 6
GO:0009901 anther dehiscence 8
GO:0009908 flower development 56
GO:0009909 regulation of flower development 6
GO:0009910 negative regulation of flower development 10
GO:0009942 longitudinal axis specification 2
GO:0009960 endosperm development 16
GO:0010071 root meristem specification 6
GO:0010094 specification of carpel identity 6
GO:0010097 specification of stamen identity 6
GO:0010154 fruit development 4
GO:0010183 pollen tube guidance 40
GO:0010198 synergid death 14
GO:0010227 floral organ abscission 4
GO:0010228 vegetative to reproductive phase transition of meristem 20
GO:0010231 maintenance of seed dormancy 4
GO:0010234 anther wall tapetum cell fate specification 12
GO:0010254 nectary development 2
GO:0010431 seed maturation 2
GO:0010480 microsporocyte differentiation 4
GO:0010483 pollen tube reception 2
GO:0010582 floral meristem determinacy 2
GO:0010588 cotyledon vascular tissue pattern formation 4
GO:0010622 specification of ovule identity 2
GO:0010654 apical cell fate commitment 2
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination 8
GO:0010789 meiotic sister chromatid cohesion involved in meiosis I 2
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0019953 sexual reproduction 38
GO:0033316 meiotic spindle assembly checkpoint signaling 2
GO:0034089 establishment of meiotic sister chromatid cohesion 2
GO:0034090 maintenance of meiotic sister chromatid cohesion 8
GO:0035670 plant-type ovary development 2
GO:0040020 regulation of meiotic nuclear division 2
GO:0042138 meiotic DNA double-strand break formation 10
GO:0044703 multi-organism reproductive process 2
GO:0045143 homologous chromosome segregation 4
GO:0045694 regulation of embryo sac egg cell differentiation 2
GO:0048235 pollen sperm cell differentiation 18
GO:0048236 plant-type sporogenesis 16
GO:0048240 sperm capacitation 26
GO:0048283 indeterminate inflorescence morphogenesis 2
GO:0048317 seed morphogenesis 4
GO:0048354 mucilage biosynthetic process involved in seed coat development 4
GO:0048359 mucilage metabolic process involved in seed coat development 6
GO:0048437 floral organ development 2
GO:0048439 flower morphogenesis 2
GO:0048440 carpel development 2
GO:0048444 floral organ morphogenesis 6
GO:0048446 petal morphogenesis 2
GO:0048449 floral organ formation 2
GO:0048451 petal formation 2
GO:0048461 flower structural organization 8
GO:0048462 carpel formation 4
GO:0048481 plant ovule development 2
GO:0048482 plant ovule morphogenesis 2
GO:0048530 fruit morphogenesis 2
GO:0048544 recognition of pollen 748
GO:0048574 long-day photoperiodism, flowering 12
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:0048609 multicellular organismal reproductive process 2
GO:0048653 anther development 6
GO:0048654 anther morphogenesis 18
GO:0048658 anther wall tapetum development 16
GO:0048700 acquisition of desiccation tolerance in seed 32
GO:0048833 specification of floral organ number 32
GO:0048834 specification of petal number 4
GO:0048868 pollen tube development 8
GO:0051177 meiotic sister chromatid cohesion 2
GO:0051321 meiotic cell cycle 2
GO:0051455 monopolar spindle attachment to meiosis I kinetochore 2
GO:0051754 meiotic sister chromatid cohesion, centromeric 6
GO:0055047 generative cell mitosis 2
GO:0060320 rejection of self pollen 48
GO:0060321 acceptance of pollen 2
GO:0060858 vesicle-mediated transport involved in floral organ abscission 2
GO:0060862 negative regulation of floral organ abscission 4
GO:0061936 fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm 6
GO:0061983 meiosis II cell cycle process 2
GO:0070192 chromosome organization involved in meiotic cell cycle 2
GO:0080001 mucilage extrusion from seed coat 2
GO:0080086 stamen filament development 60
GO:0080127 fruit septum development 6
GO:0080166 stomium development 2
GO:0080187 floral organ senescence 2
GO:0090173 regulation of synaptonemal complex assembly 6
GO:0090306 meiotic spindle assembly 8
GO:0090567 reproductive shoot system development 2
GO:0098755 maintenance of seed dormancy by absisic acid 6
GO:0140013 meiotic nuclear division 2
GO:0140301 pollen-stigma interaction 6
GO:1902039 negative regulation of seed dormancy process 6
GO:1903046 meiotic cell cycle process 2
GO:1903343 positive regulation of meiotic DNA double-strand break formation 2
GO:1905516 positive regulation of fertilization 2
GO:1990058 fruit replum development 4
GO:1990059 fruit valve development 2
GO:1990109 rejection of pollen from other species 38
GO:1990918 double-strand break repair involved in meiotic recombination 2
GO:2000028 regulation of photoperiodism, flowering 20
GO:2000033 regulation of seed dormancy process 54
GO:2000711 positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001