Functional clusters
Information
- Type Gene Ontology
- Description double fertilization forming a zygote and endosperm
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_6 | 20 | 77 | 2.07992e-35 |
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 3 | CH_atr_135 | 5 | 19 | 0.00000224793 |
| Brassica carinata | ChrC03 | 3 | CH_bca_12 | 9 | 10 | 2.12418e-19 |
| Brassica carinata | ChrC02 | 3 | CH_bca_225 | 5 | 8 | 0.000000112721 |
| Brassica carinata | ChrC03 | 3 | CH_bca_320 | 4 | 4 | 0.00000110635 |
| Brassica carinata | ChrC02 | 3 | CH_bca_321 | 4 | 4 | 0.00000110635 |
| Brassica carinata | ChrB01 | 3 | CH_bca_39 | 7 | 8 | 0.0000000000000530147 |
| Brassica carinata | ChrB01 | 3 | CH_bca_643 | 4 | 9 | 0.000138376 |
| Brassica carinata | ChrC07 | 3 | CH_bca_68 | 6 | 6 | 0.00000000000367434 |
| Brassica carinata | ChrC01 | 3 | CH_bca_899 | 3 | 3 | 0.000601795 |
| Brassica carinata | ChrB07 | 3 | CH_bca_900 | 3 | 3 | 0.000601795 |
| Brassica napus | C02 | 3 | CH_bna_1 | 20 | 23 | 2.29453e-47 |
| Brassica napus | C08 | 3 | CH_bna_150 | 5 | 6 | 0.0000000145807 |
| Brassica napus | A02 | 3 | CH_bna_17 | 8 | 8 | 1.48767e-17 |
| Brassica napus | A08 | 3 | CH_bna_18 | 8 | 8 | 1.48767e-17 |
| Brassica napus | A02 | 3 | CH_bna_249 | 4 | 4 | 0.00000131779 |
| Brassica napus | A03 | 3 | CH_bna_311 | 4 | 5 | 0.00000657915 |
| Brassica napus | C09 | 3 | CH_bna_335 | 5 | 16 | 0.0000104524 |
| Brassica napus | C04 | 3 | CH_bna_528 | 4 | 10 | 0.000274276 |
| Brassica napus | A06 | 3 | CH_bna_652 | 3 | 3 | 0.000709939 |
| Brassica napus | C03 | 3 | CH_bna_653 | 3 | 3 | 0.000709939 |
| Brassica napus | A08 | 3 | CH_bna_67 | 6 | 6 | 0.00000000000447266 |
| Brassica napus | C03 | 3 | CH_bna_79 | 6 | 7 | 0.0000000000312593 |
| Brassica oleracea | C4 | 3 | CH_bol_135 | 5 | 11 | 0.000000310829 |
| Brassica oleracea | C2 | 3 | CH_bol_5 | 12 | 13 | 1.64834e-28 |
| Brassica oleracea | C3 | 3 | CH_bol_53 | 6 | 8 | 0.0000000000890201 |
| Brassica rapa | A03 | 3 | CH_bra_186 | 4 | 10 | 0.000104961 |
| Brassica rapa | A02 | 3 | CH_bra_4 | 9 | 9 | 7.52667e-21 |
| Brassica rapa | A02 | 3 | CH_bra_90 | 4 | 4 | 0.000000504123 |
| Coffea canephora | chr3 | 3 | CH_ccan_10 | 7 | 56 | 0.0000000000000254543 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_108 | 4 | 4 | 0.0000000962052 |
| Carya illinoinensis | Chr04 | 3 | CH_cil_379 | 3 | 3 | 0.000142945 |
| Davidia involucrata | GWHABJS00000004 | 3 | CH_din_39 | 6 | 6 | 0.000000000000255535 |
| Eutrema salsugineum | scaffold_2 | 3 | CH_esa_217 | 3 | 3 | 0.000282781 |
| Gossypium raimondii | Chr13 | 3 | CH_gra_235 | 3 | 3 | 0.000126148 |
| Manihot esculenta | Chromosome09 | 3 | CH_mes_302 | 3 | 3 | 0.000131027 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_100 | 4 | 4 | 0.000000241661 |
| Rhododendron simsii | chr01 | 3 | CH_rsi_384 | 3 | 3 | 0.000138048 |
| Salix brachista | GWHAAZH00000016 | 3 | CH_sbr_50 | 6 | 6 | 0.00000000000244755 |
| Salix brachista | GWHAAZH00000003 | 3 | CH_sbr_55 | 7 | 13 | 0.00000000000812171 |
| Theobroma cacao | Chromosome_9 | 3 | CH_tca_294 | 3 | 3 | 0.000106563 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_6 | 20 | 77 | 2.07992e-35 |
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 4 | CH_atr_135 | 5 | 19 | 0.00000224793 |
| Brassica carinata | ChrC03 | 4 | CH_bca_12 | 9 | 10 | 2.12418e-19 |
| Brassica carinata | ChrC02 | 4 | CH_bca_225 | 5 | 8 | 0.000000112721 |
| Brassica carinata | ChrC03 | 4 | CH_bca_320 | 4 | 4 | 0.00000110635 |
| Brassica carinata | ChrC02 | 4 | CH_bca_321 | 4 | 4 | 0.00000110635 |
| Brassica carinata | ChrB01 | 4 | CH_bca_39 | 7 | 8 | 0.0000000000000530147 |
| Brassica carinata | ChrB01 | 4 | CH_bca_643 | 4 | 9 | 0.000138376 |
| Brassica carinata | ChrC07 | 4 | CH_bca_68 | 6 | 6 | 0.00000000000367434 |
| Brassica carinata | ChrC01 | 4 | CH_bca_899 | 3 | 3 | 0.000601795 |
| Brassica carinata | ChrB07 | 4 | CH_bca_900 | 3 | 3 | 0.000601795 |
| Brassica napus | C02 | 4 | CH_bna_1 | 20 | 23 | 2.29453e-47 |
| Brassica napus | C08 | 4 | CH_bna_150 | 5 | 6 | 0.0000000145807 |
| Brassica napus | A02 | 4 | CH_bna_17 | 8 | 8 | 1.48767e-17 |
| Brassica napus | A08 | 4 | CH_bna_18 | 8 | 8 | 1.48767e-17 |
| Brassica napus | A02 | 4 | CH_bna_249 | 4 | 4 | 0.00000131779 |
| Brassica napus | A03 | 4 | CH_bna_311 | 4 | 5 | 0.00000657915 |
| Brassica napus | C09 | 4 | CH_bna_335 | 5 | 16 | 0.0000104524 |
| Brassica napus | C04 | 4 | CH_bna_528 | 4 | 10 | 0.000274276 |
| Brassica napus | A06 | 4 | CH_bna_652 | 3 | 3 | 0.000709939 |
| Brassica napus | C03 | 4 | CH_bna_653 | 3 | 3 | 0.000709939 |
| Brassica napus | A08 | 4 | CH_bna_67 | 6 | 6 | 0.00000000000447266 |
| Brassica napus | C03 | 4 | CH_bna_79 | 6 | 7 | 0.0000000000312593 |
| Brassica oleracea | C4 | 4 | CH_bol_135 | 5 | 11 | 0.000000310829 |
| Brassica oleracea | C2 | 4 | CH_bol_5 | 12 | 13 | 1.64834e-28 |
| Brassica oleracea | C3 | 4 | CH_bol_53 | 6 | 8 | 0.0000000000890201 |
| Brassica rapa | A03 | 4 | CH_bra_186 | 4 | 10 | 0.000104961 |
| Brassica rapa | A02 | 4 | CH_bra_4 | 9 | 9 | 7.52667e-21 |
| Brassica rapa | A02 | 4 | CH_bra_90 | 4 | 4 | 0.000000504123 |
| Coffea canephora | chr3 | 4 | CH_ccan_10 | 7 | 56 | 0.0000000000000254543 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_108 | 4 | 4 | 0.0000000962052 |
| Carya illinoinensis | Chr04 | 4 | CH_cil_379 | 3 | 3 | 0.000142945 |
| Davidia involucrata | GWHABJS00000004 | 4 | CH_din_39 | 6 | 6 | 0.000000000000255535 |
| Eutrema salsugineum | scaffold_2 | 4 | CH_esa_217 | 3 | 3 | 0.000282781 |
| Gossypium raimondii | Chr13 | 4 | CH_gra_235 | 3 | 3 | 0.000126148 |
| Manihot esculenta | Chromosome09 | 4 | CH_mes_302 | 3 | 3 | 0.000131027 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_100 | 4 | 4 | 0.000000241661 |
| Rhododendron simsii | chr01 | 4 | CH_rsi_384 | 3 | 3 | 0.000138048 |
| Salix brachista | GWHAAZH00000016 | 4 | CH_sbr_50 | 6 | 6 | 0.00000000000244755 |
| Salix brachista | GWHAAZH00000003 | 4 | CH_sbr_55 | 7 | 13 | 0.00000000000812171 |
| Theobroma cacao | Chromosome_9 | 4 | CH_tca_294 | 3 | 3 | 0.000106563 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0061936 | fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |