Functional clusters

Information

  • Type Gene Ontology
  • Description sexual reproduction

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 3 CH_aag_38 6 8 0.00000000929446
Brassica carinata ChrC02 3 CH_bca_291 6 11 0.000000513898
Brassica napus C04 3 CH_bna_413 5 9 0.0000377416
Brassica napus A05 3 CH_bna_545 4 5 0.00031061
Brassica oleracea C4 3 CH_bol_295 4 5 0.000152733
Coffea canephora chr2 3 CH_ccan_358 4 38 0.000504546
Carpinus fangiana Cfa04 3 CH_cfa_240 4 5 0.000135012
Eucalyptus grandis Chr05 3 CH_egr_207 8 9 0.000000000000169689
Erythranthe guttata scaffold_6 3 CH_egut_92 7 8 0.000000000254101
Oryza sativa ssp. japonica chr10 3 CH_osa_166 5 6 0.000000533998
Oryza sativa ssp. japonica chr03 3 CH_osa_239 5 9 0.0000110833
Sequoiadendron giganteum chr4 3 CH_sgi_882 6 16 0.0000189764
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_167 5 7 0.0000104569
Vitis vinifera chr15 3 CH_vvi_303 4 5 0.000190847
Zea mays 5 3 CH_zma_17 9 9 0.00000000000000130195
Zea mays 1 3 CH_zma_221 5 10 0.000150121
Zea mays 6 3 CH_zma_281 4 5 0.000444866
Zea mays 4 3 CH_zma_57 7 9 0.00000000101252
Zea mays 9 3 CH_zma_75 10 45 0.0000000225374
Anthoceros agrestis Sc2ySwM_344 4 CH_aag_38 6 8 0.00000000929446
Brassica carinata ChrC02 4 CH_bca_291 6 11 0.000000513898
Brassica napus C04 4 CH_bna_413 5 9 0.0000377416
Brassica napus A05 4 CH_bna_545 4 5 0.00031061
Brassica oleracea C4 4 CH_bol_295 4 5 0.000152733
Coffea canephora chr2 4 CH_ccan_358 4 38 0.000504546
Carpinus fangiana Cfa04 4 CH_cfa_240 4 5 0.000135012
Eucalyptus grandis Chr05 4 CH_egr_207 8 9 0.000000000000169689
Erythranthe guttata scaffold_6 4 CH_egut_92 7 8 0.000000000254101
Oryza sativa ssp. japonica chr10 4 CH_osa_166 5 6 0.000000533998
Oryza sativa ssp. japonica chr03 4 CH_osa_239 5 9 0.0000110833
Sequoiadendron giganteum chr4 4 CH_sgi_882 6 16 0.0000189764
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_167 5 7 0.0000104569
Vitis vinifera chr15 4 CH_vvi_303 4 5 0.000190847
Zea mays 5 4 CH_zma_17 9 9 0.00000000000000130195
Zea mays 1 4 CH_zma_221 5 10 0.000150121
Zea mays 6 4 CH_zma_281 4 5 0.000444866
Zea mays 4 4 CH_zma_57 7 9 0.00000000101252
Zea mays 9 4 CH_zma_75 10 45 0.0000000225374

Available child term results

Ontology identifier Description Number of clusters
GO:0007060 male meiosis chromosome segregation 4
GO:0007065 male meiosis sister chromatid cohesion 4
GO:0007140 male meiotic nuclear division 2
GO:0007141 male meiosis I 4
GO:0007142 male meiosis II 6
GO:0007143 female meiotic nuclear division 2
GO:0007276 gamete generation 2
GO:0007292 female gamete generation 2
GO:0007338 single fertilization 2
GO:0009556 microsporogenesis 2
GO:0009567 double fertilization forming a zygote and endosperm 82
GO:0045694 regulation of embryo sac egg cell differentiation 2
GO:0048235 pollen sperm cell differentiation 18
GO:0048236 plant-type sporogenesis 16
GO:0048240 sperm capacitation 26
GO:0055047 generative cell mitosis 2
GO:0061936 fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm 6
GO:1905516 positive regulation of fertilization 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001