Functional clusters

Information

  • Type Gene Ontology
  • Description response to abiotic stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 3 CH_ath_619 15 66 0.000992726
Carya illinoinensis Chr08 3 CH_cil_254 12 15 0.00000302068
Cucumis melo chr08 3 CH_cme_142 24 80 0.00000985213
Manihot esculenta Chromosome14 3 CH_mes_419 23 69 0.000762929
Punica granatum NC_045131.1 3 CH_pgr_299 24 76 0.000180804
Papaver somniferum NW_020624377.1 3 CH_pso_438 13 29 0.000043509
Vigna mungo CM024071.1 3 CH_vmu_325 12 25 0.000939361
Arabidopsis thaliana Chr2 4 CH_ath_619 15 66 0.000992726
Carya illinoinensis Chr08 4 CH_cil_254 12 15 0.00000302068
Cucumis melo chr08 4 CH_cme_142 24 80 0.00000985213
Manihot esculenta Chromosome14 4 CH_mes_419 23 69 0.000762929
Punica granatum NC_045131.1 4 CH_pgr_299 24 76 0.000180804
Papaver somniferum NW_020624377.1 4 CH_pso_438 13 29 0.000043509
Vigna mungo CM024071.1 4 CH_vmu_325 12 25 0.000939361

Available child term results

Ontology identifier Description Number of clusters
GO:0001666 response to hypoxia 20
GO:0006971 hypotonic response 2
GO:0006972 hyperosmotic response 8
GO:0009266 response to temperature stimulus 4
GO:0009268 response to pH 2
GO:0009269 response to desiccation 26
GO:0009270 response to humidity 2
GO:0009408 response to heat 22
GO:0009409 response to cold 6
GO:0009411 response to UV 8
GO:0009413 response to flooding 2
GO:0009414 response to water deprivation 8
GO:0009415 response to water 10
GO:0009416 response to light stimulus 2
GO:0009584 detection of visible light 10
GO:0009585 red, far-red light phototransduction 4
GO:0009590 detection of gravity 4
GO:0009631 cold acclimation 4
GO:0009638 phototropism 4
GO:0009639 response to red or far red light 2
GO:0009643 photosynthetic acclimation 38
GO:0009644 response to high light intensity 8
GO:0009645 response to low light intensity stimulus 2
GO:0009646 response to absence of light 10
GO:0009651 response to salt stress 2
GO:0009704 de-etiolation 2
GO:0009785 blue light signaling pathway 2
GO:0009819 drought recovery 18
GO:0009959 negative gravitropism 6
GO:0010018 far-red light signaling pathway 6
GO:0010048 vernalization response 14
GO:0010099 regulation of photomorphogenesis 4
GO:0010114 response to red light 2
GO:0010165 response to X-ray 6
GO:0010196 nonphotochemical quenching 4
GO:0010201 response to continuous far red light stimulus by the high-irradiance response system 2
GO:0010202 response to low fluence red light stimulus 4
GO:0010203 response to very low fluence red light stimulus 6
GO:0010205 photoinhibition 6
GO:0010218 response to far red light 4
GO:0010221 negative regulation of vernalization response 8
GO:0010224 response to UV-B 6
GO:0010225 response to UV-C 6
GO:0010286 heat acclimation 26
GO:0010332 response to gamma radiation 2
GO:0010378 temperature compensation of the circadian clock 2
GO:0010447 response to acidic pH 8
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0016048 detection of temperature stimulus 6
GO:0034605 cellular response to heat 6
GO:0034644 cellular response to UV 2
GO:0042538 hyperosmotic salinity response 4
GO:0042631 cellular response to water deprivation 14
GO:0043153 entrainment of circadian clock by photoperiod 10
GO:0043157 response to cation stress 2
GO:0048571 long-day photoperiodism 2
GO:0048572 short-day photoperiodism 20
GO:0048574 long-day photoperiodism, flowering 12
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:0050982 detection of mechanical stimulus 42
GO:0055121 response to high fluence blue light stimulus by blue high-fluence system 2
GO:0055122 response to very low light intensity stimulus 4
GO:0070417 cellular response to cold 10
GO:0070482 response to oxygen levels 2
GO:0071258 cellular response to gravity 12
GO:0071260 cellular response to mechanical stimulus 2
GO:0071454 cellular response to anoxia 4
GO:0071456 cellular response to hypoxia 48
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 6
GO:0071490 cellular response to far red light 98
GO:0071492 cellular response to UV-A 2
GO:0071493 cellular response to UV-B 12
GO:0071494 cellular response to UV-C 6
GO:0071497 cellular response to freezing 8
GO:0080167 response to karrikin 12
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090547 response to low humidity 2
GO:1900034 regulation of cellular response to heat 6
GO:1900035 negative regulation of cellular response to heat 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900067 regulation of cellular response to alkaline pH 8
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1901000 regulation of response to salt stress 2
GO:1901001 negative regulation of response to salt stress 20
GO:1901002 positive regulation of response to salt stress 2
GO:1902446 regulation of shade avoidance 6
GO:1902584 positive regulation of response to water deprivation 2
GO:2000028 regulation of photoperiodism, flowering 20
GO:2000030 regulation of response to red or far red light 2
GO:2000306 positive regulation of photomorphogenesis 4
GO:2000685 positive regulation of cellular response to X-ray 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001