Functional clusters

Information

  • Type Gene Ontology
  • Description short-day photoperiodism

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_565 2 2 0.000515668
Brassica oleracea C9 3 CH_bol_354 2 2 0.000490292
Brassica rapa A10 3 CH_bra_310 2 2 0.000901558
Capsicum annuum PGAv.1.6.scaffold497 3 CH_can_148 3 3 0.0000000409487
Capsella rubella scaffold_6 3 CH_cru_297 2 2 0.000438693
Erigeron canadensis Conyza_canadensis_scaffold:4 3 CH_eca_357 2 2 0.000269233
Eutrema salsugineum scaffold_2 3 CH_esa_187 2 2 0.00022845
Hydrangea macrophylla Hma1.2p1_0588F.1 3 CH_hma_167 2 2 0.000111086
Schrenkiella parvula ch6-6 3 CH_spa_184 2 2 0.000472404
Solanum pennellii Spenn-ch02 3 CH_spe_404 2 3 0.000400297
Arabidopsis thaliana Chr5 4 CH_ath_565 2 2 0.000515668
Brassica oleracea C9 4 CH_bol_354 2 2 0.000490292
Brassica rapa A10 4 CH_bra_310 2 2 0.000901558
Capsicum annuum PGAv.1.6.scaffold497 4 CH_can_148 3 3 0.0000000409487
Capsella rubella scaffold_6 4 CH_cru_297 2 2 0.000438693
Erigeron canadensis Conyza_canadensis_scaffold:4 4 CH_eca_357 2 2 0.000269233
Eutrema salsugineum scaffold_2 4 CH_esa_187 2 2 0.00022845
Hydrangea macrophylla Hma1.2p1_0588F.1 4 CH_hma_167 2 2 0.000111086
Schrenkiella parvula ch6-6 4 CH_spa_184 2 2 0.000472404
Solanum pennellii Spenn-ch02 4 CH_spe_404 2 3 0.000400297

Available child term results

Ontology identifier Description Number of clusters
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 14

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001