Functional clusters
Information
- Type Gene Ontology
- Description photosynthetic acclimation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Cannabis sativa | NC_044377.1 | 3 | CH_cansat_195 | 3 | 6 | 0.0000470434 |
| Cucumis melo | chr06 | 3 | CH_cme_150 | 3 | 6 | 0.0000293507 |
| Corchorus olitorius | AWUE01015649.1 | 3 | CH_col_21 | 6 | 20 | 0.000000000848767 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 3 | CH_eca_235 | 3 | 7 | 0.0000302106 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_28 | 10 | 10 | 2.50175e-30 |
| Fragaria x ananassa | Fvb6-3 | 3 | CH_fan_279 | 3 | 3 | 0.0000106953 |
| Fragaria x ananassa | Fvb6-2 | 3 | CH_fan_28 | 7 | 21 | 0.0000000000000423397 |
| Fragaria x ananassa | Fvb6-3 | 3 | CH_fan_336 | 3 | 4 | 0.0000427666 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_337 | 3 | 4 | 0.0000427666 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_114 | 4 | 6 | 0.000000021883 |
| Glycine max | Gm12 | 3 | CH_gma_234 | 3 | 3 | 0.00000561859 |
| Helianthus annuus | HanXRQChr10 | 3 | CH_han_115 | 7 | 58 | 0.0000000000132451 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_49 | 6 | 8 | 0.0000000000000018097 |
| Manihot esculenta | Chromosome07 | 3 | CH_mes_240 | 3 | 3 | 0.00000861357 |
| Physcomitrium patens | Chr04 | 3 | CH_ppa_53 | 4 | 11 | 0.00000241135 |
| Phaseolus vulgaris | Chr06 | 3 | CH_pvu_160 | 3 | 3 | 0.00000231593 |
| Quercus lobata | 6 | 3 | CH_qlo_292 | 4 | 4 | 0.000000000982676 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_63 | 7 | 15 | 2.32438e-17 |
| Vigna mungo | CM024075.1 | 3 | CH_vmu_43 | 4 | 4 | 0.000000000810176 |
| Cannabis sativa | NC_044377.1 | 4 | CH_cansat_195 | 3 | 6 | 0.0000470434 |
| Cucumis melo | chr06 | 4 | CH_cme_150 | 3 | 6 | 0.0000293507 |
| Corchorus olitorius | AWUE01015649.1 | 4 | CH_col_21 | 6 | 20 | 0.000000000848767 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 4 | CH_eca_235 | 3 | 7 | 0.0000302106 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_28 | 10 | 10 | 2.50175e-30 |
| Fragaria x ananassa | Fvb6-3 | 4 | CH_fan_279 | 3 | 3 | 0.0000106953 |
| Fragaria x ananassa | Fvb6-2 | 4 | CH_fan_28 | 7 | 21 | 0.0000000000000423397 |
| Fragaria x ananassa | Fvb6-3 | 4 | CH_fan_336 | 3 | 4 | 0.0000427666 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_337 | 3 | 4 | 0.0000427666 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_114 | 4 | 6 | 0.000000021883 |
| Glycine max | Gm12 | 4 | CH_gma_234 | 3 | 3 | 0.00000561859 |
| Helianthus annuus | HanXRQChr10 | 4 | CH_han_115 | 7 | 58 | 0.0000000000132451 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_49 | 6 | 8 | 0.0000000000000018097 |
| Manihot esculenta | Chromosome07 | 4 | CH_mes_240 | 3 | 3 | 0.00000861357 |
| Physcomitrium patens | Chr04 | 4 | CH_ppa_53 | 4 | 11 | 0.00000241135 |
| Phaseolus vulgaris | Chr06 | 4 | CH_pvu_160 | 3 | 3 | 0.00000231593 |
| Quercus lobata | 6 | 4 | CH_qlo_292 | 4 | 4 | 0.000000000982676 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_63 | 7 | 15 | 2.32438e-17 |
| Vigna mungo | CM024075.1 | 4 | CH_vmu_43 | 4 | 4 | 0.000000000810176 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |