Functional clusters

Information

  • Type Gene Ontology
  • Description response to light stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ceratophyllum demersum 12 3 CH_cde_193 5 5 0.000592782
Ceratophyllum demersum 12 4 CH_cde_193 5 5 0.000592782

Available child term results

Ontology identifier Description Number of clusters
GO:0009411 response to UV 8
GO:0009584 detection of visible light 10
GO:0009585 red, far-red light phototransduction 4
GO:0009638 phototropism 4
GO:0009639 response to red or far red light 2
GO:0009643 photosynthetic acclimation 38
GO:0009644 response to high light intensity 8
GO:0009645 response to low light intensity stimulus 2
GO:0009646 response to absence of light 10
GO:0009704 de-etiolation 2
GO:0009785 blue light signaling pathway 2
GO:0010018 far-red light signaling pathway 6
GO:0010099 regulation of photomorphogenesis 4
GO:0010114 response to red light 2
GO:0010196 nonphotochemical quenching 4
GO:0010201 response to continuous far red light stimulus by the high-irradiance response system 2
GO:0010202 response to low fluence red light stimulus 4
GO:0010203 response to very low fluence red light stimulus 6
GO:0010205 photoinhibition 6
GO:0010218 response to far red light 4
GO:0010224 response to UV-B 6
GO:0010225 response to UV-C 6
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0034644 cellular response to UV 2
GO:0043153 entrainment of circadian clock by photoperiod 10
GO:0048571 long-day photoperiodism 2
GO:0048572 short-day photoperiodism 20
GO:0048574 long-day photoperiodism, flowering 12
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:0055121 response to high fluence blue light stimulus by blue high-fluence system 2
GO:0055122 response to very low light intensity stimulus 4
GO:0071490 cellular response to far red light 98
GO:0071492 cellular response to UV-A 2
GO:0071493 cellular response to UV-B 12
GO:0071494 cellular response to UV-C 6
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:1902446 regulation of shade avoidance 6
GO:2000028 regulation of photoperiodism, flowering 20
GO:2000030 regulation of response to red or far red light 2
GO:2000306 positive regulation of photomorphogenesis 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001