Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB05 1 CH_bca_906 3 4 0.00044299
Brassica carinata ChrB05 2 CH_bca_906 3 4 0.00044299

Available child term results

Ontology identifier Description Number of clusters
21.6.1 Cell wall organisation.lignin.monolignol biosynthesis 2
21.6.1.1 Cell wall organisation.lignin.monolignol biosynthesis.hydroxycinnamoyl-CoA:quinate/shikimate O-hydroxycinnamoyltransferase (HCT) 30
21.6.1.10.1 Cell wall organisation.lignin.monolignol biosynthesis.Cyt-P450 hydroxylase electron supply.NADPH:cytochrome P450 reductase (CPR) 21
21.6.1.2 Cell wall organisation.lignin.monolignol biosynthesis.p-coumaroyl shikimate/quinate 3'-hydroxylase (C3'H) 47
21.6.1.3 Cell wall organisation.lignin.monolignol biosynthesis.caffeoyl shikimate esterase (CSE) 13
21.6.1.4 Cell wall organisation.lignin.monolignol biosynthesis.caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT) 123
21.6.1.5 Cell wall organisation.lignin.monolignol biosynthesis.cinnamoyl-CoA reductase (CCR) 41
21.6.1.6 Cell wall organisation.lignin.monolignol biosynthesis.ferulate 5-hydroxylase (F5H) 18
21.6.1.7 Cell wall organisation.lignin.monolignol biosynthesis.caffeic acid O-methyltransferase (COMT) 31
21.6.1.8 Cell wall organisation.lignin.monolignol biosynthesis.cinnamyl-alcohol dehydrogenase 16
21.6.1.9 Cell wall organisation.lignin.monolignol biosynthesis.Cyt-P450 hydroxylase scaffold protein (MSBP) 13
21.6.2.1 Cell wall organisation.lignin.monolignol conjugation and polymerization.p-coumaroyl-CoA:monolignol transferase (PMT) 2
21.6.2.2 Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin laccase 70
21.6.2.3 Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin peroxidase 40
21.6.3.1 Cell wall organisation.lignin.monolignol glycosylation and deglycosylation.coniferyl-alcohol glucosyltransferase 20
21.6.3.2 Cell wall organisation.lignin.monolignol glycosylation and deglycosylation.coniferin beta-glucosidase 76

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001