Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol biosynthesis.Cyt-P450 hydroxylase electron supply.NADPH:cytochrome P450 reductase (CPR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC09 1 CH_bca_855 2 2 0.000320646
Brassica oleracea C1 1 CH_bol_381 2 2 0.000490292
Brassica rapa A01 1 CH_bra_352 2 2 0.00064397
Cardamine hirsuta Chr7 1 CH_chi_296 2 2 0.000207361
Helianthus annuus HanXRQChr12 1 CH_han_689 2 2 0.000579643
Manihot esculenta Chromosome18 1 CH_mes_358 2 2 0.000183189
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_585 2 2 0.000119596
Sequoiadendron giganteum chr4 1 CH_sgi_1274 2 3 0.000438418
Schrenkiella parvula ch7-4 1 CH_spa_215 2 2 0.000236202
Utricularia gibba unitig_744 1 CH_ugi_285 2 2 0.000734592
Brassica carinata ChrC09 2 CH_bca_855 2 2 0.000320646
Brassica oleracea C1 2 CH_bol_381 2 2 0.000490292
Brassica rapa A01 2 CH_bra_352 2 2 0.00064397
Cardamine hirsuta Chr7 2 CH_chi_296 2 2 0.000207361
Helianthus annuus HanXRQChr12 2 CH_han_689 2 2 0.000579643
Lotus japonicus chr4 2 CH_lja_395 2 3 0.000643531
Manihot esculenta Chromosome18 2 CH_mes_358 2 2 0.000183189
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_585 2 2 0.000119596
Sequoiadendron giganteum chr4 2 CH_sgi_1274 2 3 0.000438418
Schrenkiella parvula ch7-4 2 CH_spa_215 2 2 0.000236202
Utricularia gibba unitig_744 2 CH_ugi_285 2 2 0.000734592

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001