Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin peroxidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR05 1 CH_aox_233 2 2 0.000240597
Beta vulgaris Scaffold_0008 1 CH_bvu_79 3 4 0.0000000411268
Capsicum annuum PGAv.1.6.scaffold358 1 CH_can_116 3 3 0.0000000409487
Ceratophyllum demersum 3 1 CH_cde_281 2 2 0.000789796
Chenopodium quinoa C_Quinoa_Scaffold_2646 1 CH_cqu_166 3 3 0.00000018859
Chenopodium quinoa C_Quinoa_Scaffold_2370 1 CH_cqu_167 3 3 0.00000018859
Glycine max Gm16 1 CH_gma_614 2 2 0.00079707
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_536 2 2 0.00077101
Magnolia biondii Chr16 1 CH_mbi_563 2 3 0.000437077
Nelumbo nucifera chr1 1 CH_nnu_373 2 2 0.000261609
Nicotiana tabacum Nitab4.5_0000723 1 CH_nta_148 2 2 0.000329182
Oryza sativa ssp. japonica chr01 1 CH_osa_325 2 2 0.000316874
Petunia axillaris Peaxi162Scf00418 1 CH_pax_91 3 3 0.000000148503
Punica granatum NC_045132.1 1 CH_pgr_350 2 3 0.000675279
Sechium edule LG13 1 CH_sed_342 2 2 0.000713419
Solanum lycopersicum SL4.0ch02 1 CH_sly_178 3 3 0.000000289388
Solanum pennellii Spenn-ch02 1 CH_spe_157 3 3 0.000000166188
Selenicereus undatus Scaffold_33679 1 CH_sun_252 2 2 0.000435983
Trochodendron aralioides group11 1 CH_tar_376 2 2 0.00018011
Zea mays 8 1 CH_zma_283 2 2 0.000766969
Aquilegia oxysepala CHR05 2 CH_aox_233 2 2 0.000240597
Beta vulgaris Scaffold_0008 2 CH_bvu_79 3 4 0.0000000411268
Capsicum annuum PGAv.1.6.scaffold358 2 CH_can_116 3 3 0.0000000409487
Ceratophyllum demersum 3 2 CH_cde_281 2 2 0.000789796
Chenopodium quinoa C_Quinoa_Scaffold_2646 2 CH_cqu_166 3 3 0.00000018859
Chenopodium quinoa C_Quinoa_Scaffold_2370 2 CH_cqu_167 3 3 0.00000018859
Glycine max Gm16 2 CH_gma_614 2 2 0.00079707
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_536 2 2 0.00077101
Magnolia biondii Chr16 2 CH_mbi_563 2 3 0.000437077
Nelumbo nucifera chr1 2 CH_nnu_373 2 2 0.000261609
Nicotiana tabacum Nitab4.5_0000723 2 CH_nta_148 2 2 0.000329182
Oryza sativa ssp. japonica chr01 2 CH_osa_325 2 2 0.000316874
Petunia axillaris Peaxi162Scf00418 2 CH_pax_91 3 3 0.000000148503
Punica granatum NC_045132.1 2 CH_pgr_350 2 3 0.000675279
Sechium edule LG13 2 CH_sed_342 2 2 0.000713419
Solanum lycopersicum SL4.0ch02 2 CH_sly_178 3 3 0.000000289388
Solanum pennellii Spenn-ch02 2 CH_spe_157 3 3 0.000000166188
Selenicereus undatus Scaffold_33679 2 CH_sun_252 2 2 0.000435983
Trochodendron aralioides group11 2 CH_tar_376 2 2 0.00018011
Zea mays 8 2 CH_zma_283 2 2 0.000766969

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001