Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol biosynthesis.caffeoyl shikimate esterase (CSE)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C06 1 CH_bna_182 3 5 0.0000000516218
Brassica oleracea C6 1 CH_bol_436 2 5 0.000980504
Corylus avellana 11 1 CH_cav_331 2 3 0.00023
Capsella rubella scaffold_1 1 CH_cru_276 2 2 0.0000731154
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_104 3 3 0.0000000120814
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_213 3 7 0.00000055474
Simmondsia chinensis GWHAASQ00000010 1 CH_sci_185 3 41 0.000115733
Brassica oleracea C6 2 CH_bol_436 2 5 0.000980504
Corylus avellana 11 2 CH_cav_331 2 3 0.00023
Capsella rubella scaffold_1 2 CH_cru_276 2 2 0.0000731154
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_104 3 3 0.0000000120814
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_213 3 7 0.00000055474
Simmondsia chinensis GWHAASQ00000010 2 CH_sci_185 3 41 0.000115733

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001