Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol biosynthesis.caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 1 CH_acertr_45 4 6 0.0000000000788289
Arabidopsis lyrata scaffold_2 1 CH_aly_428 2 2 0.000660044
Aquilegia oxysepala CHR06 1 CH_aox_173 2 2 0.0000801989
Arabidopsis thaliana Chr1 1 CH_ath_354 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00036 1 CH_atr_258 2 5 0.000238322
Brassica napus C02 1 CH_bna_374 3 6 0.0000117658
Camellia sinensis var. sinensis Chr6 1 CH_camsi_122 5 16 0.0000000000364565
Cannabis sativa NC_044373.1 1 CH_cansat_125 3 5 0.000000258686
Capsicum annuum PGAv.1.6.scaffold370 1 CH_can_150 3 3 0.000000358301
Corylus avellana 8 1 CH_cav_145 3 5 0.000000881596
Carpinus fangiana Cfa01 1 CH_cfa_155 3 5 0.00000481647
Carpinus fangiana Cfa02 1 CH_cfa_72 4 6 0.00000000136806
Cardamine hirsuta Chr1 1 CH_chi_144 3 4 0.000000573272
Carya illinoinensis Chr04 1 CH_cil_142 4 5 0.000000000250027
Corchorus olitorius AWUE01016436.1 1 CH_col_85 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1214 1 CH_cqu_220 3 3 0.00000153229
Chenopodium quinoa C_Quinoa_Scaffold_4446 1 CH_cqu_277 3 5 0.0000153157
Davidia involucrata GWHABJS00000001 1 CH_din_148 3 4 0.000000525223
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_161 3 3 0.000000362441
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_61 4 4 0.0000000000569249
Erythranthe guttata scaffold_5 1 CH_egut_192 4 14 0.000000572392
Eutrema salsugineum scaffold_9 1 CH_esa_331 2 2 0.000761499
Fragaria x ananassa Fvb1-4 1 CH_fan_318 3 6 0.0000236132
Fragaria x ananassa Fvb1-3 1 CH_fan_319 3 6 0.0000236132
Fragaria x ananassa Fvb1-2 1 CH_fan_94 4 7 0.00000000841099
Fragaria vesca Fvb1 1 CH_fve_299 3 9 0.0000960708
Fragaria vesca Fvb1 1 CH_fve_44 5 8 0.00000000000400451
Gossypium hirsutum D04 1 CH_ghi_169 4 6 0.00000000203838
Helianthus annuus HanXRQChr09 1 CH_han_119 6 32 0.0000000000324201
Lonicera japonica GWHAAZE00000004 1 CH_lonja_213 3 4 0.00000021518
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_49 6 15 0.00000000000000847845
Magnolia biondii Chr07 1 CH_mbi_97 4 10 0.00000000252478
Medicago truncatula chr4 1 CH_mtr_357 4 31 0.000000822684
Nelumbo nucifera chr2 1 CH_nnu_411 2 2 0.000436015
Olea europaea chr1 1 CH_oeu_385 2 2 0.000533789
Oryza sativa ssp. japonica chr08 1 CH_osa_92 3 3 0.0000000418381
Punica granatum NC_045128.1 1 CH_pgr_80 4 10 0.00000000930953
Prunus persica Pp07 1 CH_ppe_511 2 2 0.000745962
Prunus persica Pp02 1 CH_ppe_512 2 2 0.000745962
Papaver somniferum NC_039359.1 1 CH_pso_121 5 18 0.0000000000495974
Papaver somniferum NC_039359.1 1 CH_pso_266 4 20 0.000000226303
Phaseolus vulgaris Chr03 1 CH_pvu_171 3 3 0.000000453468
Quercus lobata CM012294 1 CH_qlo_33 8 8 1.52546e-25
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_85 5 6 0.00000000000014627
Rhododendron simsii chr05 1 CH_rsi_218 3 4 0.000000499669
Salvia bowleyana GWHASIU00000001 1 CH_sbo_266 4 74 0.0000406417
Salix brachista GWHAAZH00000010 1 CH_sbr_101 3 3 0.0000000595633
Simmondsia chinensis GWHAASQ00000008 1 CH_sci_66 3 3 0.000000217487
Sechium edule LG06 1 CH_sed_341 2 2 0.000713419
Sequoiadendron giganteum chr10 1 CH_sgi_1325 2 2 0.000487151
Sequoiadendron giganteum chr10 1 CH_sgi_676 3 14 0.0000129491
Solanum lycopersicum SL4.0ch02 1 CH_sly_219 3 4 0.00000248001
Selaginella moellendorffii scaffold_3 1 CH_smo_123 2 2 0.000280112
Schrenkiella parvula ch5-6 1 CH_spa_303 2 2 0.00078734
Solanum pennellii Spenn-ch02 1 CH_spe_512 2 2 0.000667186
Selenicereus undatus Scaffold_3410 1 CH_sun_82 3 7 0.00000969678
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_170 3 6 0.00000601409
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_333 2 2 0.000278772
Vanilla planifolia CM028160.1 1 CH_vpl_6 7 23 3.76382e-16
Vitis vinifera chr1 1 CH_vvi_114 4 6 0.00000000653248
Vitis vinifera chr11 1 CH_vvi_96 4 4 0.000000000435717
Acer truncatum chr7 2 CH_acertr_45 4 6 0.0000000000788289
Arabidopsis lyrata scaffold_2 2 CH_aly_428 2 2 0.000660044
Aquilegia oxysepala CHR06 2 CH_aox_173 2 2 0.0000801989
Arabidopsis thaliana Chr1 2 CH_ath_354 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00036 2 CH_atr_258 2 5 0.000238322
Camellia sinensis var. sinensis Chr6 2 CH_camsi_122 5 16 0.0000000000364565
Cannabis sativa NC_044373.1 2 CH_cansat_125 3 5 0.000000258686
Capsicum annuum PGAv.1.6.scaffold370 2 CH_can_150 3 3 0.000000358301
Corylus avellana 8 2 CH_cav_145 3 5 0.000000881596
Carpinus fangiana Cfa01 2 CH_cfa_155 3 5 0.00000481647
Carpinus fangiana Cfa02 2 CH_cfa_72 4 6 0.00000000136806
Cardamine hirsuta Chr1 2 CH_chi_144 3 4 0.000000573272
Carya illinoinensis Chr04 2 CH_cil_142 4 5 0.000000000250027
Corchorus olitorius AWUE01016436.1 2 CH_col_85 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1214 2 CH_cqu_220 3 3 0.00000153229
Chenopodium quinoa C_Quinoa_Scaffold_4446 2 CH_cqu_277 3 5 0.0000153157
Davidia involucrata GWHABJS00000001 2 CH_din_148 3 4 0.000000525223
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_161 3 3 0.000000362441
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_61 4 4 0.0000000000569249
Eucalyptus grandis Chr08 2 CH_egr_398 4 8 0.0000000300764
Eucalyptus grandis Chr03 2 CH_egr_578 3 4 0.0000058768
Erythranthe guttata scaffold_5 2 CH_egut_192 4 14 0.000000572392
Eutrema salsugineum scaffold_9 2 CH_esa_331 2 2 0.000761499
Fragaria x ananassa Fvb1-4 2 CH_fan_318 3 6 0.0000236132
Fragaria x ananassa Fvb1-3 2 CH_fan_319 3 6 0.0000236132
Fragaria x ananassa Fvb1-2 2 CH_fan_94 4 7 0.00000000841099
Fragaria vesca Fvb1 2 CH_fve_299 3 9 0.0000960708
Fragaria vesca Fvb1 2 CH_fve_44 5 8 0.00000000000400451
Gossypium hirsutum D04 2 CH_ghi_169 4 6 0.00000000203838
Helianthus annuus HanXRQChr09 2 CH_han_119 6 32 0.0000000000324201
Lotus japonicus chr4 2 CH_lja_229 3 8 0.0000240337
Lonicera japonica GWHAAZE00000004 2 CH_lonja_213 3 4 0.00000021518
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_49 6 15 0.00000000000000847845
Magnolia biondii Chr07 2 CH_mbi_97 4 10 0.00000000252478
Nelumbo nucifera chr2 2 CH_nnu_411 2 2 0.000436015
Olea europaea chr1 2 CH_oeu_385 2 2 0.000533789
Oryza sativa ssp. japonica chr08 2 CH_osa_92 3 3 0.0000000418381
Punica granatum NC_045128.1 2 CH_pgr_80 4 10 0.00000000930953
Prunus persica Pp07 2 CH_ppe_511 2 2 0.000745962
Prunus persica Pp02 2 CH_ppe_512 2 2 0.000745962
Papaver somniferum NC_039359.1 2 CH_pso_121 5 18 0.0000000000495974
Papaver somniferum NC_039359.1 2 CH_pso_266 4 20 0.000000226303
Phaseolus vulgaris Chr03 2 CH_pvu_171 3 3 0.000000453468
Quercus lobata CM012294 2 CH_qlo_33 8 8 1.52546e-25
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_85 5 6 0.00000000000014627
Rhododendron simsii chr05 2 CH_rsi_218 3 4 0.000000499669
Salvia bowleyana GWHASIU00000001 2 CH_sbo_266 4 74 0.0000406417
Salix brachista GWHAAZH00000010 2 CH_sbr_101 3 3 0.0000000595633
Simmondsia chinensis GWHAASQ00000008 2 CH_sci_66 3 3 0.000000217487
Sechium edule LG06 2 CH_sed_341 2 2 0.000713419
Sequoiadendron giganteum chr10 2 CH_sgi_1325 2 2 0.000487151
Sequoiadendron giganteum chr10 2 CH_sgi_676 3 14 0.0000129491
Solanum lycopersicum SL4.0ch02 2 CH_sly_219 3 4 0.00000248001
Selaginella moellendorffii scaffold_3 2 CH_smo_123 2 2 0.000280112
Schrenkiella parvula ch5-6 2 CH_spa_303 2 2 0.00078734
Solanum pennellii Spenn-ch02 2 CH_spe_512 2 2 0.000667186
Selenicereus undatus Scaffold_3410 2 CH_sun_82 3 7 0.00000969678
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_170 3 6 0.00000601409
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_333 2 2 0.000278772
Vanilla planifolia CM028160.1 2 CH_vpl_6 7 23 3.76382e-16
Vitis vinifera chr1 2 CH_vvi_114 4 6 0.00000000653248
Vitis vinifera chr11 2 CH_vvi_96 4 4 0.000000000435717

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001