Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol glycosylation and deglycosylation.coniferin beta-glucosidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 1 CH_acertr_335 2 2 0.000070497
Avicennia marina ScioBoG_18782_HRSCAF_18867 1 CH_ama_59 2 2 0.0000862218
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_590 2 2 0.000299383
Arabidopsis thaliana Chr1 1 CH_ath_430 2 5 0.000859414
Brassica carinata ChrC06 1 CH_bca_811 2 2 0.000213764
Brassica rapa A03 1 CH_bra_236 2 2 0.000128794
Camellia sinensis var. sinensis Chr7 1 CH_camsi_64 5 10 0.0000000000000501324
Cannabis sativa NC_044371.1 1 CH_cansat_305 2 2 0.000196993
Cicer arietinum L. Ca_LG7_v3 1 CH_car_170 2 2 0.0000778301
Coffea canephora chr5 1 CH_ccan_267 2 3 0.000191649
Citrus clementina scaffold_2 1 CH_ccl_406 2 2 0.000246093
Cardamine hirsuta Chr2 1 CH_chi_108 3 3 0.0000000286668
Capsella rubella scaffold_2 1 CH_cru_114 3 3 0.0000000320764
Cucumis sativus L. chr3 1 CH_csa_301 2 2 0.000500856
Durio zibethinus NW_019167982.1 1 CH_dzi_193 2 2 0.0000463489
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_117 3 3 0.0000000302034
Eutrema salsugineum scaffold_8 1 CH_esa_258 2 2 0.00022845
Gossypium hirsutum D10 1 CH_ghi_259 3 3 0.000000176463
Glycine max Gm12 1 CH_gma_615 2 2 0.00079707
Glycine max Gm07 1 CH_gma_616 2 2 0.00079707
Malus domestica Chr10 1 CH_mdo_573 2 2 0.000227527
Pisum sativum chr4LG4 1 CH_psa_294 2 2 0.00015649
Populus trichocarpa Chr04 1 CH_ptr_57 5 7 0.0000000000000105481
Phaseolus vulgaris Chr05 1 CH_pvu_470 2 2 0.000734727
Quercus lobata 5 1 CH_qlo_363 3 3 0.0000000159937
Sequoiadendron giganteum chr10 1 CH_sgi_322 4 5 0.00000000021849
Solanum lycopersicum SL4.0ch02 1 CH_sly_157 3 3 0.000000103353
Schrenkiella parvula ch2-2 1 CH_spa_276 2 3 0.000708559
Solanum pennellii Spenn-ch02 1 CH_spe_127 3 3 0.0000000296764
Trochodendron aralioides group0 1 CH_tar_484 2 3 0.000540303
Theobroma cacao Chromosome_6 1 CH_tca_134 3 3 0.0000000321845
Vigna mungo CM024075.1 1 CH_vmu_429 2 2 0.000969211
Vigna mungo CM024079.1 1 CH_vmu_430 2 2 0.000969211
Vigna mungo CM024074.1 1 CH_vmu_431 2 2 0.000969211
Vanilla planifolia CM028161.1 1 CH_vpl_269 2 2 0.000221664
Vitis vinifera chr19 1 CH_vvi_351 2 2 0.000228189
Zea mays 2 1 CH_zma_293 2 4 0.000920285
Acer truncatum chr10 2 CH_acertr_335 2 2 0.000070497
Avicennia marina ScioBoG_18782_HRSCAF_18867 2 CH_ama_59 2 2 0.0000862218
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_590 2 2 0.000299383
Arabidopsis thaliana Chr1 2 CH_ath_430 2 5 0.000859414
Brassica carinata ChrC06 2 CH_bca_811 2 2 0.000213764
Brassica rapa A03 2 CH_bra_236 2 2 0.000128794
Camellia sinensis var. sinensis Chr7 2 CH_camsi_64 5 10 0.0000000000000501324
Cannabis sativa NC_044371.1 2 CH_cansat_305 2 2 0.000196993
Cicer arietinum L. Ca_LG7_v3 2 CH_car_170 2 2 0.0000778301
Coffea canephora chr5 2 CH_ccan_267 2 3 0.000191649
Citrus clementina scaffold_2 2 CH_ccl_406 2 2 0.000246093
Cardamine hirsuta Chr2 2 CH_chi_108 3 3 0.0000000286668
Capsella rubella scaffold_2 2 CH_cru_114 3 3 0.0000000320764
Cucumis sativus L. chr3 2 CH_csa_301 2 2 0.000500856
Durio zibethinus NW_019167982.1 2 CH_dzi_193 2 2 0.0000463489
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_117 3 3 0.0000000302034
Eucalyptus grandis Chr08 2 CH_egr_844 2 2 0.000351165
Eutrema salsugineum scaffold_8 2 CH_esa_258 2 2 0.00022845
Gossypium hirsutum D10 2 CH_ghi_259 3 3 0.000000176463
Glycine max Gm12 2 CH_gma_615 2 2 0.00079707
Glycine max Gm07 2 CH_gma_616 2 2 0.00079707
Lotus japonicus chr6 2 CH_lja_397 2 3 0.000643531
Malus domestica Chr10 2 CH_mdo_573 2 2 0.000227527
Pisum sativum chr4LG4 2 CH_psa_294 2 2 0.00015649
Populus trichocarpa Chr04 2 CH_ptr_57 5 7 0.0000000000000105481
Phaseolus vulgaris Chr05 2 CH_pvu_470 2 2 0.000734727
Quercus lobata 5 2 CH_qlo_363 3 3 0.0000000159937
Sequoiadendron giganteum chr10 2 CH_sgi_322 4 5 0.00000000021849
Solanum lycopersicum SL4.0ch02 2 CH_sly_157 3 3 0.000000103353
Schrenkiella parvula ch2-2 2 CH_spa_276 2 3 0.000708559
Solanum pennellii Spenn-ch02 2 CH_spe_127 3 3 0.0000000296764
Trochodendron aralioides group0 2 CH_tar_484 2 3 0.000540303
Theobroma cacao Chromosome_6 2 CH_tca_134 3 3 0.0000000321845
Vigna mungo CM024075.1 2 CH_vmu_429 2 2 0.000969211
Vigna mungo CM024079.1 2 CH_vmu_430 2 2 0.000969211
Vigna mungo CM024074.1 2 CH_vmu_431 2 2 0.000969211
Vanilla planifolia CM028161.1 2 CH_vpl_269 2 2 0.000221664
Vitis vinifera chr19 2 CH_vvi_351 2 2 0.000228189
Zea mays 2 2 CH_zma_293 2 4 0.000920285

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001