Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin laccase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 1 | CH_acertr_139 | 3 | 3 | 0.0000001491 |
| Aquilegia oxysepala | CHR02 | 1 | CH_aox_101 | 3 | 5 | 0.00000337578 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_300 | 2 | 2 | 0.000827917 |
| Camellia sinensis var. sinensis | Chr10 | 1 | CH_camsi_304 | 3 | 3 | 0.000000264941 |
| Cannabis sativa | NC_044375.1 | 1 | CH_cansat_254 | 3 | 10 | 0.0000930039 |
| Coffea canephora | chr6 | 1 | CH_ccan_112 | 3 | 28 | 0.0000024754 |
| Citrus clementina | scaffold_6 | 1 | CH_ccl_224 | 3 | 5 | 0.00000847519 |
| Carpinus fangiana | Cfa07 | 1 | CH_cfa_176 | 3 | 6 | 0.0000144456 |
| Carya illinoinensis | Chr09 | 1 | CH_cil_260 | 3 | 3 | 0.00000126786 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1995 | 1 | CH_cqu_231 | 3 | 3 | 0.0000018859 |
| Davidia involucrata | GWHABJS00000021 | 1 | CH_din_223 | 3 | 5 | 0.0000254987 |
| Eucalyptus grandis | Chr01 | 1 | CH_egr_126 | 6 | 6 | 4.64155e-17 |
| Gossypium hirsutum | A03 | 1 | CH_ghi_427 | 3 | 4 | 0.0000233329 |
| Glycine max | Gm18 | 1 | CH_gma_226 | 5 | 62 | 0.00000153918 |
| Lupinus albus | Lalb_Chr03 | 1 | CH_lal_336 | 3 | 24 | 0.000467081 |
| Lonicera japonica | GWHAAZE00000008 | 1 | CH_lonja_293 | 3 | 5 | 0.00000645348 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 1 | CH_lsa_319 | 3 | 7 | 0.0000396364 |
| Magnolia biondii | Chr14 | 1 | CH_mbi_84 | 5 | 22 | 0.000000000276343 |
| Oryza sativa ssp. japonica | chr05 | 1 | CH_osa_125 | 3 | 4 | 0.000000334676 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_389 | 2 | 2 | 0.000792184 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_258 | 3 | 3 | 0.0000066652 |
| Phaseolus vulgaris | Chr08 | 1 | CH_pvu_188 | 3 | 3 | 0.00000133611 |
| Quercus lobata | 7 | 1 | CH_qlo_590 | 3 | 6 | 0.0000131876 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_181 | 4 | 8 | 0.00000000167582 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_586 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_283 | 6 | 20 | 0.0000000000240313 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_537 | 6 | 77 | 0.000000143852 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_657 | 3 | 5 | 0.00000630447 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_280 | 3 | 8 | 0.0000346947 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_321 | 3 | 9 | 0.0000185165 |
| Trochodendron aralioides | group1 | 1 | CH_tar_185 | 3 | 4 | 0.00000259476 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_110 | 4 | 6 | 0.00000000583156 |
| Vigna mungo | CM024070.1 | 1 | CH_vmu_152 | 4 | 39 | 0.0000218051 |
| Vitis vinifera | chr8 | 1 | CH_vvi_148 | 4 | 9 | 0.0000000822347 |
| Zea mays | 3 | 1 | CH_zma_83 | 3 | 5 | 0.000000392121 |
| Acer truncatum | chr8 | 2 | CH_acertr_139 | 3 | 3 | 0.0000001491 |
| Aquilegia oxysepala | CHR02 | 2 | CH_aox_101 | 3 | 5 | 0.00000337578 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_300 | 2 | 2 | 0.000827917 |
| Camellia sinensis var. sinensis | Chr10 | 2 | CH_camsi_304 | 3 | 3 | 0.000000264941 |
| Cannabis sativa | NC_044375.1 | 2 | CH_cansat_254 | 3 | 10 | 0.0000930039 |
| Coffea canephora | chr6 | 2 | CH_ccan_112 | 3 | 28 | 0.0000024754 |
| Citrus clementina | scaffold_6 | 2 | CH_ccl_224 | 3 | 5 | 0.00000847519 |
| Carpinus fangiana | Cfa07 | 2 | CH_cfa_176 | 3 | 6 | 0.0000144456 |
| Carya illinoinensis | Chr09 | 2 | CH_cil_260 | 3 | 3 | 0.00000126786 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1995 | 2 | CH_cqu_231 | 3 | 3 | 0.0000018859 |
| Davidia involucrata | GWHABJS00000021 | 2 | CH_din_223 | 3 | 5 | 0.0000254987 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_126 | 6 | 6 | 4.64155e-17 |
| Gossypium hirsutum | A03 | 2 | CH_ghi_427 | 3 | 4 | 0.0000233329 |
| Glycine max | Gm18 | 2 | CH_gma_226 | 5 | 62 | 0.00000153918 |
| Lupinus albus | Lalb_Chr03 | 2 | CH_lal_336 | 3 | 24 | 0.000467081 |
| Lonicera japonica | GWHAAZE00000008 | 2 | CH_lonja_293 | 3 | 5 | 0.00000645348 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 2 | CH_lsa_319 | 3 | 7 | 0.0000396364 |
| Magnolia biondii | Chr14 | 2 | CH_mbi_84 | 5 | 22 | 0.000000000276343 |
| Oryza sativa ssp. japonica | chr05 | 2 | CH_osa_125 | 3 | 4 | 0.000000334676 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_389 | 2 | 2 | 0.000792184 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_258 | 3 | 3 | 0.0000066652 |
| Phaseolus vulgaris | Chr08 | 2 | CH_pvu_188 | 3 | 3 | 0.00000133611 |
| Quercus lobata | 7 | 2 | CH_qlo_590 | 3 | 6 | 0.0000131876 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_181 | 4 | 8 | 0.00000000167582 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_586 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_283 | 6 | 20 | 0.0000000000240313 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_537 | 6 | 77 | 0.000000143852 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_657 | 3 | 5 | 0.00000630447 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_280 | 3 | 8 | 0.0000346947 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_321 | 3 | 9 | 0.0000185165 |
| Trochodendron aralioides | group1 | 2 | CH_tar_185 | 3 | 4 | 0.00000259476 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_110 | 4 | 6 | 0.00000000583156 |
| Vigna mungo | CM024070.1 | 2 | CH_vmu_152 | 4 | 39 | 0.0000218051 |
| Vitis vinifera | chr8 | 2 | CH_vvi_148 | 4 | 9 | 0.0000000822347 |
| Zea mays | 3 | 2 | CH_zma_83 | 3 | 5 | 0.000000392121 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |