Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol biosynthesis.cinnamoyl-CoA reductase (CCR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 1 CH_acertr_334 2 2 0.000070497
Avicennia marina ScioBoG_14204_HRSCAF_14270 1 CH_ama_125 2 2 0.000517331
Camellia sinensis var. sinensis Chr15 1 CH_camsi_551 2 2 0.0000458547
Capsicum annuum PGAv.1.6.scaffold407 1 CH_can_408 2 2 0.000495663
Citrus clementina scaffold_7 1 CH_ccl_324 2 2 0.0000820311
Carya illinoinensis Chr02 1 CH_cil_516 2 3 0.000557817
Citrullus lanatus CG_Chr10 1 CH_cla_50 3 4 0.000000188867
Cucumis melo chr04 1 CH_cme_106 4 41 0.000000450034
Cucumis sativus L. chr3 1 CH_csa_49 4 4 0.00000000000872629
Daucus carota DCARv2_Chr3 1 CH_dca_110 3 4 0.0000000976195
Helianthus annuus HanXRQChr16 1 CH_han_513 2 2 0.000115929
Magnolia biondii Chr04 1 CH_mbi_665 2 4 0.000874119
Oryza sativa ssp. japonica chr02 1 CH_osa_148 4 27 0.00000254923
Populus trichocarpa Chr01 1 CH_ptr_40 6 11 4.69435e-17
Salix brachista GWHAAZH00000001 1 CH_sbr_343 2 2 0.000378084
Sechium edule LG05 1 CH_sed_22 5 5 0.0000000000000244852
Sequoiadendron giganteum chr1 1 CH_sgi_209 6 16 0.000000000000246953
Sequoiadendron giganteum chr3 1 CH_sgi_87 9 31 4.52415e-21
Trochodendron aralioides group4 1 CH_tar_445 2 2 0.00036022
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_334 2 2 0.000278772
Acer truncatum chr10 2 CH_acertr_334 2 2 0.000070497
Avicennia marina ScioBoG_14204_HRSCAF_14270 2 CH_ama_125 2 2 0.000517331
Camellia sinensis var. sinensis Chr15 2 CH_camsi_551 2 2 0.0000458547
Capsicum annuum PGAv.1.6.scaffold407 2 CH_can_408 2 2 0.000495663
Citrus clementina scaffold_7 2 CH_ccl_324 2 2 0.0000820311
Carya illinoinensis Chr02 2 CH_cil_516 2 3 0.000557817
Citrullus lanatus CG_Chr10 2 CH_cla_50 3 4 0.000000188867
Cucumis melo chr04 2 CH_cme_106 4 41 0.000000450034
Cucumis sativus L. chr3 2 CH_csa_49 4 4 0.00000000000872629
Daucus carota DCARv2_Chr3 2 CH_dca_110 3 4 0.0000000976195
Helianthus annuus HanXRQChr16 2 CH_han_513 2 2 0.000115929
Lotus japonicus chr3 2 CH_lja_328 2 2 0.000214523
Magnolia biondii Chr04 2 CH_mbi_665 2 4 0.000874119
Oryza sativa ssp. japonica chr02 2 CH_osa_148 4 27 0.00000254923
Populus trichocarpa Chr01 2 CH_ptr_40 6 11 4.69435e-17
Salix brachista GWHAAZH00000001 2 CH_sbr_343 2 2 0.000378084
Sechium edule LG05 2 CH_sed_22 5 5 0.0000000000000244852
Sequoiadendron giganteum chr1 2 CH_sgi_209 6 16 0.000000000000246953
Sequoiadendron giganteum chr3 2 CH_sgi_87 9 31 4.52415e-21
Trochodendron aralioides group4 2 CH_tar_445 2 2 0.00036022
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_334 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001