Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol biosynthesis.hydroxycinnamoyl-CoA:quinate/shikimate O-hydroxycinnamoyltransferase (HCT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group25 1 CH_ach_92 2 2 0.0000543213
Corylus avellana 11 1 CH_cav_274 2 2 0.0000766695
Carpinus fangiana Cfa01 1 CH_cfa_284 2 3 0.000227195
Carya illinoinensis Chr01 1 CH_cil_434 2 2 0.000185948
Capsella rubella scaffold_1 1 CH_cru_397 2 3 0.000657999
Daucus carota DCARv2_Chr5 1 CH_dca_433 2 2 0.000637775
Davidia involucrata GWHABJS00000013 1 CH_din_430 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_65 4 8 0.0000000000948596
Eucalyptus grandis Chr06 1 CH_egr_268 4 7 0.000000000105246
Erythranthe guttata scaffold_9 1 CH_egut_459 2 5 0.000728067
Helianthus annuus HanXRQChr05 1 CH_han_714 2 3 0.00069554
Magnolia biondii Chr14 1 CH_mbi_677 2 3 0.00087414
Malus domestica Chr17 1 CH_mdo_621 2 3 0.00034128
Prunus persica Pp03 1 CH_ppe_47 6 12 4.80291e-17
Trochodendron aralioides group1 1 CH_tar_147 3 4 0.000000216254
Actinidia chinensis Lachesis_group25 2 CH_ach_92 2 2 0.0000543213
Corylus avellana 11 2 CH_cav_274 2 2 0.0000766695
Carpinus fangiana Cfa01 2 CH_cfa_284 2 3 0.000227195
Carya illinoinensis Chr01 2 CH_cil_434 2 2 0.000185948
Capsella rubella scaffold_1 2 CH_cru_397 2 3 0.000657999
Daucus carota DCARv2_Chr5 2 CH_dca_433 2 2 0.000637775
Davidia involucrata GWHABJS00000013 2 CH_din_430 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_65 4 8 0.0000000000948596
Eucalyptus grandis Chr06 2 CH_egr_268 4 7 0.000000000105246
Erythranthe guttata scaffold_9 2 CH_egut_459 2 5 0.000728067
Helianthus annuus HanXRQChr05 2 CH_han_714 2 3 0.00069554
Magnolia biondii Chr14 2 CH_mbi_677 2 3 0.00087414
Malus domestica Chr17 2 CH_mdo_621 2 3 0.00034128
Prunus persica Pp03 2 CH_ppe_47 6 12 4.80291e-17
Trochodendron aralioides group1 2 CH_tar_147 3 4 0.000000216254

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001