Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol biosynthesis.p-coumaroyl shikimate/quinate 3'-hydroxylase (C3'H)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_2 1 CH_aly_323 2 2 0.000198013
Arabidopsis thaliana Chr1 1 CH_ath_274 2 2 0.0000859476
Camellia sinensis var. sinensis Chr10 1 CH_camsi_550 2 2 0.0000458547
Capsicum annuum PGAv.1.6.scaffold959 1 CH_can_131 3 3 0.000000102372
Carpinus fangiana Cfa08 1 CH_cfa_236 2 2 0.0000757346
Cardamine hirsuta Chr2 1 CH_chi_305 2 2 0.000207361
Carya illinoinensis Chr09 1 CH_cil_435 2 2 0.000185948
Capsella rubella scaffold_2 1 CH_cru_335 2 2 0.000219346
Erythranthe guttata scaffold_14 1 CH_egut_66 4 4 0.0000000000173747
Magnolia biondii Chr19 1 CH_mbi_43 7 34 0.0000000000000111532
Malus domestica Chr08 1 CH_mdo_572 2 2 0.000227527
Petunia axillaris Peaxi162Scf00003 1 CH_pax_335 2 3 0.000633164
Prunus persica Pp01 1 CH_ppe_83 4 4 0.00000000000622717
Populus trichocarpa Chr16 1 CH_ptr_389 2 2 0.0001734
Rhododendron simsii chr04 1 CH_rsi_411 2 3 0.000193586
Striga asiatica scaffold66 1 CH_sas_99 2 2 0.000187611
Salix brachista GWHAAZH00000016 1 CH_sbr_295 2 2 0.000189042
Sequoiadendron giganteum chr5 1 CH_sgi_508 3 6 0.0000000711915
Solanum lycopersicum SL4.0ch10 1 CH_sly_147 3 3 0.0000000516764
Solanum pennellii Spenn-ch10 1 CH_spe_126 3 3 0.0000000296764
Solanum tuberosum ST4.03ch10 1 CH_stu_170 3 3 0.0000000787843
Solanum tuberosum ST4.03ch01 1 CH_stu_611 2 2 0.000768679
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_98 3 4 0.000000051809
Arabidopsis lyrata scaffold_2 2 CH_aly_323 2 2 0.000198013
Arabidopsis thaliana Chr1 2 CH_ath_274 2 2 0.0000859476
Camellia sinensis var. sinensis Chr10 2 CH_camsi_550 2 2 0.0000458547
Capsicum annuum PGAv.1.6.scaffold959 2 CH_can_131 3 3 0.000000102372
Carpinus fangiana Cfa08 2 CH_cfa_236 2 2 0.0000757346
Cardamine hirsuta Chr2 2 CH_chi_305 2 2 0.000207361
Carya illinoinensis Chr09 2 CH_cil_435 2 2 0.000185948
Capsella rubella scaffold_2 2 CH_cru_335 2 2 0.000219346
Eucalyptus grandis Chr01 2 CH_egr_493 3 6 0.000000411004
Erythranthe guttata scaffold_14 2 CH_egut_66 4 4 0.0000000000173747
Magnolia biondii Chr19 2 CH_mbi_43 7 34 0.0000000000000111532
Malus domestica Chr08 2 CH_mdo_572 2 2 0.000227527
Petunia axillaris Peaxi162Scf00003 2 CH_pax_335 2 3 0.000633164
Prunus persica Pp01 2 CH_ppe_83 4 4 0.00000000000622717
Populus trichocarpa Chr16 2 CH_ptr_389 2 2 0.0001734
Rhododendron simsii chr04 2 CH_rsi_411 2 3 0.000193586
Striga asiatica scaffold66 2 CH_sas_99 2 2 0.000187611
Salix brachista GWHAAZH00000016 2 CH_sbr_295 2 2 0.000189042
Sequoiadendron giganteum chr5 2 CH_sgi_508 3 6 0.0000000711915
Solanum lycopersicum SL4.0ch10 2 CH_sly_147 3 3 0.0000000516764
Solanum pennellii Spenn-ch10 2 CH_spe_126 3 3 0.0000000296764
Solanum tuberosum ST4.03ch10 2 CH_stu_170 3 3 0.0000000787843
Solanum tuberosum ST4.03ch01 2 CH_stu_611 2 2 0.000768679
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_98 3 4 0.000000051809

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001