Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.lignin.monolignol biosynthesis.caffeic acid O-methyltransferase (COMT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 1 | CH_aar_244 | 2 | 2 | 0.000547395 |
| Brassica carinata | ChrC04 | 1 | CH_bca_476 | 3 | 10 | 0.00000986565 |
| Brassica napus | C09 | 1 | CH_bna_318 | 3 | 7 | 0.00000298052 |
| Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_366 | 3 | 10 | 0.00000151352 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 1 | CH_can_144 | 3 | 7 | 0.000000358241 |
| Citrus clementina | scaffold_3 | 1 | CH_ccl_454 | 2 | 2 | 0.000492187 |
| Eucalyptus grandis | Chr01 | 1 | CH_egr_269 | 4 | 5 | 0.000000000105253 |
| Eutrema salsugineum | scaffold_2 | 1 | CH_esa_119 | 3 | 6 | 0.00000347812 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_198 | 3 | 15 | 0.0000790392 |
| Glycine max | Gm06 | 1 | CH_gma_122 | 3 | 3 | 0.00000000864398 |
| Helianthus annuus | HanXRQChr08 | 1 | CH_han_79 | 4 | 4 | 0.000000000000865614 |
| Malus domestica | Chr07 | 1 | CH_mdo_122 | 4 | 8 | 0.000000000400724 |
| Manihot esculenta | Chromosome01 | 1 | CH_mes_346 | 2 | 3 | 0.000183184 |
| Trochodendron aralioides | group14 | 1 | CH_tar_132 | 3 | 3 | 0.000000108135 |
| Tarenaya hassleriana | NW_010968712.1 | 1 | CH_tha_199 | 2 | 3 | 0.000628587 |
| Utricularia gibba | unitig_748 | 1 | CH_ugi_198 | 2 | 3 | 0.000220369 |
| Aethionema arabicum | LG-10 | 2 | CH_aar_244 | 2 | 2 | 0.000547395 |
| Brassica carinata | ChrC04 | 2 | CH_bca_476 | 3 | 10 | 0.00000986565 |
| Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_366 | 3 | 10 | 0.00000151352 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 2 | CH_can_144 | 3 | 7 | 0.000000358241 |
| Citrus clementina | scaffold_3 | 2 | CH_ccl_454 | 2 | 2 | 0.000492187 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_269 | 4 | 5 | 0.000000000105253 |
| Eutrema salsugineum | scaffold_2 | 2 | CH_esa_119 | 3 | 6 | 0.00000347812 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_198 | 3 | 15 | 0.0000790392 |
| Glycine max | Gm06 | 2 | CH_gma_122 | 3 | 3 | 0.00000000864398 |
| Helianthus annuus | HanXRQChr08 | 2 | CH_han_79 | 4 | 4 | 0.000000000000865614 |
| Malus domestica | Chr07 | 2 | CH_mdo_122 | 4 | 8 | 0.000000000400724 |
| Manihot esculenta | Chromosome01 | 2 | CH_mes_346 | 2 | 3 | 0.000183184 |
| Trochodendron aralioides | group14 | 2 | CH_tar_132 | 3 | 3 | 0.000000108135 |
| Tarenaya hassleriana | NW_010968712.1 | 2 | CH_tha_199 | 2 | 3 | 0.000628587 |
| Utricularia gibba | unitig_748 | 2 | CH_ugi_198 | 2 | 3 | 0.000220369 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |