Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p28790 Brassica napus
A05p39390 Brassica napus
A09p17900 Brassica napus
Aa31LG2G10530 Aethionema arabicum
Aa31sc441G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4055 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1878 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1717 Anthoceros agrestis
Actinidia19529 Actinidia chinensis
Actinidia38524 Actinidia chinensis
Ah.02g128430 Amaranthus hybridus
Ah.10g033670 Amaranthus hybridus
AL2G17110 Arabidopsis lyrata
AL3G43950 Arabidopsis lyrata
Aqoxy2G00826 Aquilegia oxysepala
Aqoxy7G02671 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.612ZK0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BQ7YG6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N68NTR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UD3UYB Arachis hypogaea
AT1G59760 Arabidopsis thaliana
AT2G06990 Arabidopsis thaliana
ATR0626G366 Amborella trichopoda
ATR0743G088 Amborella trichopoda
Atru.chr10.855 Acer truncatum
Atru.chr12.1185 Acer truncatum
AUR62020712 Chenopodium quinoa
AUR62028012 Chenopodium quinoa
AUR62032457 Chenopodium quinoa
AUR62041131 Chenopodium quinoa
BcaB07g31184 Brassica carinata
BcaC04g22190 Brassica carinata
BcaC05g29692 Brassica carinata
BcaC06g31793 Brassica carinata
BcaC09g49458 Brassica carinata
BolC5t34494H Brassica oleracea
BolC9t55142H Brassica oleracea
BraA01t03025Z Brassica rapa
BraA05t22720Z Brassica rapa
BraA09t37424Z Brassica rapa
C05p58420 Brassica napus
C09p22270 Brassica napus
CAN.G106.8 Capsicum annuum
CAN.G855.48 Capsicum annuum
CANSAT01G0746 Cannabis sativa
CANSAT01G2932 Cannabis sativa
CARHR053350 Cardamine hirsuta
CARHR084080 Cardamine hirsuta
Carub.0002s0560 Capsella rubella
Carub.0003s2734 Capsella rubella
Ca_04095_v3 Cicer arietinum L.
Ca_17425_v3 Cicer arietinum L.
Ca_17434_v3 Cicer arietinum L.
CBR_g19459 Chara braunii
CBR_g46718 Chara braunii
Cc00_g00180 Coffea canephora
Cc02_g23550 Coffea canephora
CDE07G1513 Ceratophyllum demersum
Cfa005516 Carpinus fangiana
Cfa020741 Carpinus fangiana
Cfa022030 Carpinus fangiana
Ciclev10018695m.g Citrus clementina
Ciclev10027747m.g Citrus clementina
CiPaw.05G044800 Carya illinoinensis
CiPaw.15G156200 Carya illinoinensis
ClCG06G003200 Citrullus lanatus
ClCG11G011450 Citrullus lanatus
COL.COLO4_22854 Corchorus olitorius
Cpa.g.c47660 Carica papaya
Cpa.g.sc115.29 Carica papaya
Cpa.g.sc173.40 Carica papaya
Cre02.g117900 Chlamydomonas reinhardtii
Cre06.g289950 Chlamydomonas reinhardtii
CsaV3_2G009040 Cucumis sativus L.
CsaV3_6G009310 Cucumis sativus L.
CSS0018446 Camellia sinensis var. sinensis
CSS0021256 Camellia sinensis var. sinensis
DCAR_003282 Daucus carota
DCAR_009044 Daucus carota
Dinv12607 Davidia involucrata
Dinv26473 Davidia involucrata
Dinv29629 Davidia involucrata
Duzib170G0417 Durio zibethinus
Duzib192G0483 Durio zibethinus
ECA234G1918 Erigeron canadensis
ECA234G3787 Erigeron canadensis
EL10Ac2g03639 Beta vulgaris
EL10Ac6g13999 Beta vulgaris
Eucgr.C00066 Eucalyptus grandis
Eucgr.G00079 Eucalyptus grandis
FAN04G0279 Fragaria x ananassa
FAN07G1844 Fragaria x ananassa
FAN08G3449 Fragaria x ananassa
FAN12G0801 Fragaria x ananassa
FAN18G4440 Fragaria x ananassa
FAN22G2217 Fragaria x ananassa
FvH4_4g06170 Fragaria vesca
FvH4_5g28050 Fragaria vesca
Glyma.05G221200 Glycine max
Glyma.08G027700 Glycine max
Glyma.08G361900 Glycine max
Gohir.A06G144700 Gossypium hirsutum
Gohir.A13G182000 Gossypium hirsutum
Gohir.D06G150500 Gossypium hirsutum
Gohir.D13G185200 Gossypium hirsutum
Gorai.010G175700 Gossypium raimondii
Gorai.013G211300 Gossypium raimondii
GSVIVG01032255001 Vitis vinifera
GSVIVG01037437001 Vitis vinifera
HanXRQChr10g0301421 Helianthus annuus
HanXRQChr10g0309541 Helianthus annuus
HanXRQChr10g0309581 Helianthus annuus
HanXRQChr12g0359191 Helianthus annuus
Haze_01697 Corylus avellana
Haze_19057 Corylus avellana
Haze_27024 Corylus avellana
Hma1.2p1_0052F.1_g029980 Hydrangea macrophylla
Hma1.2p1_0263F.1_g105460 Hydrangea macrophylla
HPP92_013647 Vanilla planifolia
HPP92_013648 Vanilla planifolia
HPP92_020237 Vanilla planifolia
Hund13099 Selenicereus undatus
Hund19363 Selenicereus undatus
Lalb_Chr04g0257241 Lupinus albus
Lalb_Chr05g0223741 Lupinus albus
Lalb_Chr16g0390771 Lupinus albus
Lj1g0000645 Lotus japonicus
Lj4g0027172 Lotus japonicus
Lj5C441G3 Lonicera japonica
Lju50A17G32 Lonicera japonica
Lsat_1_v5_gn_5_104301 Lactuca sativa
Lsat_1_v5_gn_5_81421 Lactuca sativa
Manes.07G030200 Manihot esculenta
Manes.18G138900 Manihot esculenta
Mapoly0044s0084 Marchantia polymorpha
Mapoly0097s0084 Marchantia polymorpha
MBI16_g37217_MAGBIO Magnolia biondii
MCO10G391 Micromonas commoda
MCO11G945 Micromonas commoda
MD08G1247600 Malus domestica
MD13G1234200 Malus domestica
MD16G1238700 Malus domestica
Medtr5g069360 Medicago truncatula
Medtr7g080730 Medicago truncatula
Medtr8g101340 Medicago truncatula
MELO3C003935.2 Cucumis melo
MELO3C021158.2 Cucumis melo
Migut.J00836 Erythranthe guttata
Migut.N00862 Erythranthe guttata
MSTRG.19396 Avicennia marina
MSTRG.27877 Avicennia marina
Nitab4.5_0000086g0040 Nicotiana tabacum
Nitab4.5_0000404g0240 Nicotiana tabacum
Nitab4.5_0000896g0030 Nicotiana tabacum
Nitab4.5_0004668g0070 Nicotiana tabacum
Nitab4.5_0004809g0060 Nicotiana tabacum
Nitab4.5_0005105g0010 Nicotiana tabacum
Nitab4.5_0005753g0010 Nicotiana tabacum
Nitab4.5_0008306g0020 Nicotiana tabacum
Nn4g26678 Nelumbo nucifera
Nn5g27075 Nelumbo nucifera
Oeu000156.1 Olea europaea
Oeu013596.1 Olea europaea
Oeu028825.1 Olea europaea
Oeu062952.1 Olea europaea
Os11g0176200 Oryza sativa ssp. japonica
Os12g0279000 Oryza sativa ssp. japonica
Peaxi162Scf00006g03312 Petunia axillaris
Peaxi162Scf00011g01833 Petunia axillaris
Peaxi162Scf00954g00227 Petunia axillaris
PGR042G3645 Punica granatum
PGR142G2022 Punica granatum
PGSC0003DMG400013698 Solanum tuberosum
PGSC0003DMG400020389 Solanum tuberosum
PGSC0003DMG400020706 Solanum tuberosum
Phvul.002G303000 Phaseolus vulgaris
Phvul.008G002600 Phaseolus vulgaris
Potri.004G228700 Populus trichocarpa
Potri.006G078000 Populus trichocarpa
Potri.018G146001 Populus trichocarpa
Pp3c10_7310 Physcomitrium patens
Pp3c14_23340 Physcomitrium patens
PRCOL_00002572 Prasinoderma coloniale
PRCOL_00005682 Prasinoderma coloniale
Prupe.1G065000 Prunus persica
Prupe.6G113400 Prunus persica
Psat3g207720 Pisum sativum
Psat6g142120 Pisum sativum
Psat7g021600 Pisum sativum
PSO063G7144 Papaver somniferum
PSO170G5833 Papaver somniferum
PSO384G2394 Papaver somniferum
PSO541G0185 Papaver somniferum
PSO675G4980 Papaver somniferum
PSO675G6315 Papaver somniferum
QL02p068499 Quercus lobata
QL11p008827 Quercus lobata
RcHm_v2.0_Chr4g0397751 Rosa chinensis
RcHm_v2.0_Chr7g0220221 Rosa chinensis
Rhsim03G0268800 Rhododendron simsii
Rhsim07G0245200 Rhododendron simsii
Rhsim07G0245300 Rhododendron simsii
Rhsim11G0118200 Rhododendron simsii
RhsimUnG0051300 Rhododendron simsii
SalBow6G3558 Salvia bowleyana
Sc22g0002310 Simmondsia chinensis
Sc23g0004350 Simmondsia chinensis
Sc23g0004700 Simmondsia chinensis
Sc23g0004820 Simmondsia chinensis
Sed0003651 Sechium edule
Sed0019296 Sechium edule
Sed0020596 Sechium edule
SEGI_02857 Sequoiadendron giganteum
SEGI_09327 Sequoiadendron giganteum
SEGI_17796 Sequoiadendron giganteum
SEGI_20488 Sequoiadendron giganteum
SEGI_25524 Sequoiadendron giganteum
SGA_v2.0_scaffold8G04457 Striga asiatica
SHI03120 Sapria himalayana
SMO141G0173 Selaginella moellendorffii
SMO358G0351 Selaginella moellendorffii
Solyc01g103080.3 Solanum lycopersicum
Solyc05g047520.4 Solanum lycopersicum
Solyc12g017860.3 Solanum lycopersicum
Sopen01g045490 Solanum pennellii
Sopen05g027830 Solanum pennellii
Sopen12g008680 Solanum pennellii
Sp2g04780 Schrenkiella parvula
Sp3g08000 Schrenkiella parvula
TAR225G0002 Trochodendron aralioides
TAR376G1111 Trochodendron aralioides
TAR383G0411 Trochodendron aralioides
THA.LOC104808911 Tarenaya hassleriana
THA.LOC104809621 Tarenaya hassleriana
THA.LOC104815315 Tarenaya hassleriana
Thecc.06G017200 Theobroma cacao
Thecc.09G194800 Theobroma cacao
Thhalv10019987m.g Eutrema salsugineum
Thhalv10023236m.g Eutrema salsugineum
TPR.G15606 Trifolium pratense
TPR.G15636 Trifolium pratense
TPR.G25490 Trifolium pratense
TPR.G647 Trifolium pratense
TWI32G0842 Tripterygium wilfordii
TWI60G1448 Tripterygium wilfordii
unitig_22.g6570 Utricularia gibba
unitig_22.g6848 Utricularia gibba
vmacro01682 Vaccinium macrocarpon
vmacro22293 Vaccinium macrocarpon
VMungo0251G0726 Vigna mungo
VMungo1383G0279 Vigna mungo
Zm00001eb337140 Zea mays
Zm00001eb379350 Zea mays

User provided reference genes

Program Settings