Gene: Sopen05g027830

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g027830
  • Transcript Identifier Sopen05g027830.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 70741937-70749872 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g027830.1

Descriptions

  • Description encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl. | hua enhancer 2 (HEN2) | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DSH, C-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , RNA helicase, ATP-dependent, SK12/DOB1 , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IEA
InterProRNA catabolic process
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT2G06990
GO:0010093
ISO
PLAZA Integrative Orthologyspecification of floral organ identity AT2G06990
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT2G06990
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT2G06990

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003724
IEA
InterProRNA helicase activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G06990
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G06990
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT2G06990

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR025696 rRNA-processing arch domain
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2