Gene: Cc00_g00180
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc00_g00180
- Transcript Identifier Cc00_g00180.1
- Gene Type Coding gene
- Location chr0 : 316972-331812 : negative
Gene Family Information
- ID HOM05D001007
- #Genes/#Species 602/100
- Phylogenetic origin
- ID ORTHO05D002932
- #Genes/#Species 253/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB P42285
- UniProtKB I1KPQ5
- UniProtKB F6H9P7
- UniProtKB P47047
- UniProtKB B9HBA6
- UniProtKB Q9CZU3
- id GSCOCG00036094001
Descriptions
- Description Superkiller viralicidic activity 2-like 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006401 | IEA | InterPro | RNA catabolic process | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | AT2G06990 |
| GO:0010093 | ISO | PLAZA Integrative Orthology | specification of floral organ identity | AT2G06990 |
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT2G06990 |
| GO:0060149 | ISO | PLAZA Integrative Orthology | negative regulation of posttranscriptional gene silencing | AT2G06990 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003724 | IEA | InterPro | RNA helicase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT2G06990 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G06990 |
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT2G06990 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR001650 | Helicase, C-terminal |
| IPR012961 | ATP-dependent RNA helicase Ski2, C-terminal |
| IPR025696 | rRNA-processing arch domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR016438 | ATP-dependent RNA helicase Ski2-like |
| Mapman id | Description |
|---|---|
| 16.4.1.2.3.1 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2 |