Gene: PGSC0003DMG400013698

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400013698
  • Transcript Identifier PGSC0003DMT400035614
  • Gene Type Coding gene
  • Location ST4.03ch05 : 43208124-43217395 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37442939
  • id PGSC0003DMG400013698.v4.03
  • uniprot M1B2J7

Descriptions

  • Description HUA enhancer 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IBA
IEA
GOA DatabaseRNA catabolic process
GO:0006401
IEA
InterProRNA catabolic process
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT2G06990
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT2G06990
GO:0010093
ISO
PLAZA Integrative Orthologyspecification of floral organ identity AT2G06990
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT2G06990
GO:0000460
IBA
GOA Databasematuration of 5.8S rRNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT2G06990
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G06990
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G06990
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR025696 rRNA-processing arch domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2