Gene: SHI03120

General Information

Structural Information

  • Species Sapria himalayana
  • Gene Identifier SHI03120
  • Transcript Identifier SHI03120-RA
  • Gene Type Coding gene
  • Location scaffold5_19632047 : 8125393-8159405 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid SHI03120-RA

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
ISO
PLAZA Homology (enrichment)RNA catabolic process HOM05D001007
GO:0031125
ISO
PLAZA Integrative OrthologyrRNA 3'-end processing AT1G59760
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT1G70070
GO:0010497
ISO
PLAZA Integrative Orthologyplasmodesmata-mediated intercellular transport AT1G70070
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT1G70070
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT2G06990
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing AT1G70070
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT2G06990
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G70070
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G59760
GO:1901259
ISO
PLAZA Integrative Orthologychloroplast rRNA processing AT1G70070
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G70070
GO:0010093
ISO
PLAZA Integrative Orthologyspecification of floral organ identity AT2G06990

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G70070
GO:0003724
ISO
PLAZA Homology (enrichment)RNA helicase activity HOM05D001007
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G70070
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G06990
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G70070
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G59760
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G59760
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G06990
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT1G70070
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT1G70070

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
IPR025696 rRNA-processing arch domain
IPR043502 DNA/RNA polymerase superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
35.1 not assigned.annotated