Gene: Glyma.05G221200

General Information

Structural Information

  • Species Glycine max
  • Gene Identifier Glyma.05G221200
  • Transcript Identifier Glyma.05G221200.3
  • Gene Type Coding gene
  • Location Gm05 : 40113148-40121682 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Glyma.05G221200.Wm82.a4.v1
  • pacid 41146990

Descriptions

  • Description PF00270//PF13234 - DEAD/DEAH box helicase (DEAD) // rRNA-processing arch domain (rRNA_proc-arch)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT2G06990
GO:0010093
ISO
PLAZA Integrative Orthologyspecification of floral organ identity AT2G06990
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT2G06990
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT2G06990
GO:0006401
ISO
PLAZA Homology (enrichment)RNA catabolic process HOM05D001007

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D001007
GO:0003724
ISO
PLAZA Homology (enrichment)RNA helicase activity HOM05D001007

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G06990
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G06990
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT2G06990

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR025696 rRNA-processing arch domain
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2