Gene: PSO170G5833
General Information
Structural Information
- Species Papaver somniferum
- Gene Identifier PSO170G5833
- Transcript Identifier PSO170G5833.01
- Gene Type Coding gene
- Location NC_039360.1 : 223460298-223466351 : negative
Gene Family Information
- ID HOM05D001007
- #Genes/#Species 602/100
- Phylogenetic origin
- ID ORTHO05D002932
- #Genes/#Species 253/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid rna-XM_026602461.1
- pid XP_026458246.1
- id gene-LOC113358781
Descriptions
- product DExH-box ATP-dependent RNA helicase DExH10-like
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006401 | IEA | InterPro | RNA catabolic process | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | AT2G06990 |
| GO:0010093 | ISO | PLAZA Integrative Orthology | specification of floral organ identity | AT2G06990 |
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT2G06990 |
| GO:0060149 | ISO | PLAZA Integrative Orthology | negative regulation of posttranscriptional gene silencing | AT2G06990 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003724 | IEA | InterPro | RNA helicase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT2G06990 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G06990 |
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT2G06990 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR012961 | ATP-dependent RNA helicase Ski2, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR001650 | Helicase, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR016438 | ATP-dependent RNA helicase Ski2-like |
| IPR025696 | rRNA-processing arch domain |
| Mapman id | Description |
|---|---|
| 16.4.1.2.3.1 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2 |