Gene: FAN04G0279

General Information

Structural Information

  • Species Fragaria x ananassa
  • Gene Identifier FAN04G0279
  • Transcript Identifier FAN04G0279.1
  • Gene Type Coding gene
  • Location Fvb5-4 : 16492023-16498020 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id maker-Fvb5-4-augustus-gene-165.33.v1.0.a1
  • pacid 50458412

Descriptions

  • Description PF00271//PF08148//PF13234 - Helicase conserved C-terminal domain (Helicase_C) // DSHCT (NUC185) domain (DSHCT) // rRNA-processing arch domain (rRNA_proc-arch)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IEA
InterProRNA catabolic process
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G59760
GO:0031125
ISO
PLAZA Integrative OrthologyrRNA 3'-end processing AT1G59760

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003724
IEA
InterProRNA helicase activity
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D001007
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D001007

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G59760
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G59760

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR025696 rRNA-processing arch domain
IPR001650 Helicase, C-terminal
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2