Gene: AT1G59760

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G59760
  • Transcript Identifier AT1G59760.1
  • Gene Type Coding gene
  • Location Chr1 : 21984571-21990110 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G59760.1
  • symbol MTR4
  • Alias AtMTR4
  • full_name homolog of yeast MTR4
  • uniprot Q9XIF2

Descriptions

  • Description RNA helicase, ATP-dependent, SK12/DOB1 protein
  • Computational description RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IEA
GOA DatabaseRNA catabolic process
GO:0006401
IBA
Gene OntologyRNA catabolic process1
GO:0006401
IEA
InterProRNA catabolic process
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IMP
Gene OntologyrRNA processing2
GO:0000460
IBA
Gene Ontologymaturation of 5.8S rRNA1
GO:0031125
IMP
Gene OntologyrRNA 3'-end processing2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IBA
Gene OntologyRNA helicase activity1
GO:0003724
IEA
InterProRNA helicase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0005730
IEA
GOA Databasenucleolus
GO:0005654
IDA
Gene Ontologynucleoplasm3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR025696 rRNA-processing arch domain
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2