Gene: TPR.G15606

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G15606
  • Transcript Identifier TPR.T16129
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_LG6 : 21127552-21136738 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA16129.v2
  • id Tp57577_TGAC_v2_gene15606.v2
  • pacid 35975454

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G59760
GO:0031125
ISO
PLAZA Integrative OrthologyrRNA 3'-end processing AT1G59760
GO:0006401
ISO
PLAZA Homology (enrichment)RNA catabolic process HOM05D001007

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D001007
GO:0003724
ISO
PLAZA Homology (enrichment)RNA helicase activity HOM05D001007

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G59760
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G59760

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2