Gene: COL.COLO4_22854

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_22854
  • Transcript Identifier COL.rna21600
  • Gene Type Coding gene
  • Location AWUE01018077.1 : 8461-18323 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna21600
  • GenBank OMO82728.1
  • id gene22826
  • gene_name COLO4_22854
  • uniprot A0A1R3IJF6

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT2G06990
GO:0031125
ISO
PLAZA Integrative OrthologyrRNA 3'-end processing AT1G59760
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT2G06990
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G59760
GO:0010093
ISO
PLAZA Integrative Orthologyspecification of floral organ identity AT2G06990
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT2G06990
GO:0006401
IEA
GOA DatabaseRNA catabolic process
GO:0006401
IEA
InterProRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G59760
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G06990
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G06990
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G59760

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR025696 rRNA-processing arch domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2