Gene: Carub.0002s0560

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0002s0560
  • Transcript Identifier Carub.0002s0560.1
  • Gene Type Coding gene
  • Location scaffold_2 : 2380357-2386034 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0002s0560.v1.1
  • pacid 39245499
  • synonym Carubv10019704m.g

Descriptions

  • Description K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IEA
InterProRNA catabolic process
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G59760
GO:0031125
ISO
PLAZA Integrative OrthologyrRNA 3'-end processing AT1G59760

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003723
IEA
InterProRNA binding
GO:0003724
IEA
InterProRNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G59760
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G59760

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR001650 Helicase, C-terminal
IPR025696 rRNA-processing arch domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2