Gene: Pp3c14_23340

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c14_23340
  • Transcript Identifier Pp3c14_23340V3.1
  • Gene Type Coding gene
  • Location Chr14 : 14941263-14948847 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c14_23340V3.1
  • pacid 32961337
  • alias Phpat.014G091000
  • alias Pp1s69_14V6
  • alias Phypa_183907
  • uniprot A0A2K1JIZ4

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031125
IEA
GOA DatabaserRNA 3'-end processing
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006401
IBA
IEA
GOA DatabaseRNA catabolic process
GO:0006401
IEA
InterProRNA catabolic process
GO:0000460
IBA
GOA Databasematuration of 5.8S rRNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005654
IEA
GOA Databasenucleoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR025696 rRNA-processing arch domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2