Gene: TPR.G25490

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G25490
  • Transcript Identifier TPR.T26359
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_scaf_162 : 244830-252215 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA26359.v2
  • id Tp57577_TGAC_v2_gene25490.v2
  • pacid 35968035
  • uniprot A0A2K3NLL7

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT2G06990
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0010093
IEA
GOA Databasespecification of floral organ identity
GO:0060149
IEA
GOA Databasenegative regulation of posttranscriptional gene silencing
GO:0006401
IEA
GOA DatabaseRNA catabolic process
GO:0006401
IEA
InterProRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005829
IEA
GOA Databasecytosol
GO:0016607
IEA
GOA Databasenuclear speck

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR011545 DEAD/DEAH box helicase domain
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR025696 rRNA-processing arch domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2