Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p13520 Brassica napus
A01p36410 Brassica napus
A02p32200 Brassica napus
A06p04300 Brassica napus
A06p44250 Brassica napus
A09p23550 Brassica napus
Aa31LG10G5190 Aethionema arabicum
Aa31LG11G12990 Aethionema arabicum
Aa31LG1G160 Aethionema arabicum
Aa31LG8G4890 Aethionema arabicum
Actinidia06843 Actinidia chinensis
Actinidia12376 Actinidia chinensis
Actinidia28809 Actinidia chinensis
Actinidia36644 Actinidia chinensis
Actinidia39846 Actinidia chinensis
Ah.05g175260 Amaranthus hybridus
Ah.06g183540 Amaranthus hybridus
AL1G26930 Arabidopsis lyrata
AL1G55280 Arabidopsis lyrata
AL3G31190 Arabidopsis lyrata
AL5G10700 Arabidopsis lyrata
Aqoxy3G00030 Aquilegia oxysepala
Aqoxy3G00110 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0WKN8B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2Z77FC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5E7A70 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.649GVM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.70JD05 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7X1Y1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H8H77X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RIX96U Arachis hypogaea
AT1G14900 Arabidopsis thaliana
AT1G48620 Arabidopsis thaliana
AT3G18035 Arabidopsis thaliana
ATR1102G021 Amborella trichopoda
Atru.chr1.1906 Acer truncatum
Atru.chr11.635 Acer truncatum
Atru.chr9.1752 Acer truncatum
AUR62000251 Chenopodium quinoa
AUR62006597 Chenopodium quinoa
AUR62015594 Chenopodium quinoa
AUR62029305 Chenopodium quinoa
BcaB02g11397 Brassica carinata
BcaB04g17392 Brassica carinata
BcaB04g18555 Brassica carinata
BcaB04g18978 Brassica carinata
BcaB04g20799 Brassica carinata
BcaB06g25871 Brassica carinata
BcaB07g30386 Brassica carinata
BcaB07g30729 Brassica carinata
BcaB07g33727 Brassica carinata
BcaC03g17058 Brassica carinata
BcaC03g17059 Brassica carinata
BcaC04g21559 Brassica carinata
BcaC05g27560 Brassica carinata
BcaC06g31289 Brassica carinata
BcaC06g34144 Brassica carinata
BcaC08g43068 Brassica carinata
BcaC08g43069 Brassica carinata
BcaC08g43070 Brassica carinata
BcaC09g48763 Brassica carinata
BcaNung05560 Brassica carinata
BolC1t04578H Brassica oleracea
BolC2t11057H Brassica oleracea
BolC2t11058H Brassica oleracea
BolC6t35458H Brassica oleracea
BolC7t43761H Brassica oleracea
BolC9t55901H Brassica oleracea
BraA01t03706Z Brassica rapa
BraA02t08234Z Brassica rapa
BraA02t08236Z Brassica rapa
BraA06t23634Z Brassica rapa
BraA09t37957Z Brassica rapa
C01p16360 Brassica napus
C01p46160 Brassica napus
C05p35440 Brassica napus
C05p48190 Brassica napus
C06p03260 Brassica napus
C07p32220 Brassica napus
CAN.G1129.17 Capsicum annuum
CAN.G222.24 Capsicum annuum
CAN.G581.1 Capsicum annuum
CANSAT01G0504 Cannabis sativa
CANSAT56G3283 Cannabis sativa
CARHR015440 Cardamine hirsuta
CARHR038230 Cardamine hirsuta
CARHR093350 Cardamine hirsuta
CARHR144160 Cardamine hirsuta
Carub.0001s1468 Capsella rubella
Carub.0001s3776 Capsella rubella
Carub.0003s1775 Capsella rubella
Carub.0005s0055 Capsella rubella
Ca_05824_v3 Cicer arietinum L.
Ca_17104_v3 Cicer arietinum L.
Ca_17205_v3 Cicer arietinum L.
Ca_25315_v3 Cicer arietinum L.
Ca_30890_v3 Cicer arietinum L.
Cc04_g06460 Coffea canephora
Cc07_g13500 Coffea canephora
Cc07_g13510 Coffea canephora
Cc11_g08210 Coffea canephora
CDE05G0212 Ceratophyllum demersum
CDE05G0743 Ceratophyllum demersum
CDE05G1637 Ceratophyllum demersum
CDE05G1722 Ceratophyllum demersum
CDE11G0143 Ceratophyllum demersum
Cfa007815 Carpinus fangiana
Cfa014986 Carpinus fangiana
Cfa019681 Carpinus fangiana
Ciclev10008667m.g Citrus clementina
Ciclev10012880m.g Citrus clementina
Ciclev10016374m.g Citrus clementina
CiPaw.03G071700 Carya illinoinensis
CiPaw.04G047300 Carya illinoinensis
CiPaw.05G193400 Carya illinoinensis
CiPaw.06G049000 Carya illinoinensis
CiPaw.16G091800 Carya illinoinensis
ClCG01G006370 Citrullus lanatus
ClCG05G011490 Citrullus lanatus
COL.COLO4_02813 Corchorus olitorius
COL.COLO4_10157 Corchorus olitorius
COL.COLO4_31503 Corchorus olitorius
Cpa.g.sc116.54 Carica papaya
Cpa.g.sc3.415 Carica papaya
Cpa.g.sc844.1 Carica papaya
CsaV3_3G020800 Cucumis sativus L.
CsaV3_5G028310 Cucumis sativus L.
CSS0002727 Camellia sinensis var. sinensis
CSS0006846 Camellia sinensis var. sinensis
CSS0023887 Camellia sinensis var. sinensis
CSS0028232 Camellia sinensis var. sinensis
CSS0033219 Camellia sinensis var. sinensis
CSS0036038 Camellia sinensis var. sinensis
DCAR_003432 Daucus carota
DCAR_007316 Daucus carota
DCAR_011326 Daucus carota
DCAR_014730 Daucus carota
DCAR_015110 Daucus carota
DCAR_030245 Daucus carota
DCAR_031739 Daucus carota
Dinv10182 Davidia involucrata
Dinv15052 Davidia involucrata
Dinv18258 Davidia involucrata
Dinv18620 Davidia involucrata
Dinv26236 Davidia involucrata
Dinv28051 Davidia involucrata
Dinv28206 Davidia involucrata
Duzib133G0405 Durio zibethinus
Duzib138G0960 Durio zibethinus
Duzib211G0031 Durio zibethinus
Duzib248G0796 Durio zibethinus
Duzib251G0122 Durio zibethinus
Duzib251G0590 Durio zibethinus
Duzib251G0855 Durio zibethinus
Duzib268G0926 Durio zibethinus
Duzib268G1509 Durio zibethinus
ECA232G3541 Erigeron canadensis
ECA234G3168 Erigeron canadensis
ECA238G0654 Erigeron canadensis
ECA238G4031 Erigeron canadensis
EL10Ac4g08051 Beta vulgaris
EL10Ac4g10047 Beta vulgaris
Eucgr.B00872 Eucalyptus grandis
Eucgr.B02941 Eucalyptus grandis
Eucgr.J01599 Eucalyptus grandis
FAN04G1779 Fragaria x ananassa
FAN07G1995 Fragaria x ananassa
FAN08G1022 Fragaria x ananassa
FAN08G2597 Fragaria x ananassa
FAN09G2477 Fragaria x ananassa
FAN13G3137 Fragaria x ananassa
FAN17G1303 Fragaria x ananassa
FAN18G3362 Fragaria x ananassa
FAN19G0233 Fragaria x ananassa
FAN21G1591 Fragaria x ananassa
FAN23G3122 Fragaria x ananassa
FAN26G2161 Fragaria x ananassa
FvH4_1g28760 Fragaria vesca
FvH4_3g22350 Fragaria vesca
FvH4_4g10240 Fragaria vesca
FvH4_4g16250 Fragaria vesca
FvH4_4g34011 Fragaria vesca
FvH4_4g34030 Fragaria vesca
FvH4_5g06490 Fragaria vesca
FvH4_5g17210 Fragaria vesca
Glyma.02G194100 Glycine max
Glyma.02G245000 Glycine max
Glyma.02G245100 Glycine max
Glyma.05G245500 Glycine max
Glyma.08G052600 Glycine max
Glyma.09G177500 Glycine max
Glyma.11G216300 Glycine max
Glyma.14G215100 Glycine max
Glyma.14G215200 Glycine max
Glyma.18G040200 Glycine max
Gohir.A04G146100 Gossypium hirsutum
Gohir.A07G078200 Gossypium hirsutum
Gohir.A07G173200 Gossypium hirsutum
Gohir.A07G223250 Gossypium hirsutum
Gohir.A12G151200 Gossypium hirsutum
Gohir.A12G151300 Gossypium hirsutum
Gohir.A12G161500 Gossypium hirsutum
Gohir.D04G190500 Gossypium hirsutum
Gohir.D07G083000 Gossypium hirsutum
Gohir.D07G180000 Gossypium hirsutum
Gohir.D07G229950 Gossypium hirsutum
Gohir.D12G154900 Gossypium hirsutum
Gohir.D12G155000 Gossypium hirsutum
Gohir.D12G164800 Gossypium hirsutum
Gorai.001G088600 Gossypium raimondii
Gorai.001G201200 Gossypium raimondii
Gorai.001G265100 Gossypium raimondii
Gorai.008G167300 Gossypium raimondii
Gorai.008G167400 Gossypium raimondii
Gorai.008G177600 Gossypium raimondii
Gorai.012G185800 Gossypium raimondii
GSVIVG01008411001 Vitis vinifera
GSVIVG01011701001 Vitis vinifera
GSVIVG01016119001 Vitis vinifera
GSVIVG01034730001 Vitis vinifera
HanXRQChr08g0221451 Helianthus annuus
HanXRQChr08g0227291 Helianthus annuus
HanXRQChr14g0444711 Helianthus annuus
HanXRQChr15g0476791 Helianthus annuus
Haze_10937 Corylus avellana
Haze_14260 Corylus avellana
Haze_18809 Corylus avellana
Hma1.2p1_0158F.1_g070210 Hydrangea macrophylla
Hma1.2p1_0330F.1_g127480 Hydrangea macrophylla
Hma1.2p1_0346F.1_g131590 Hydrangea macrophylla
Hma1.2p1_0660F.1_g197680 Hydrangea macrophylla
Hma1.2p1_1941F.1_g308400 Hydrangea macrophylla
HPP92_003549 Vanilla planifolia
HPP92_008004 Vanilla planifolia
HPP92_020321 Vanilla planifolia
HPP92_020331 Vanilla planifolia
Hund23372 Selenicereus undatus
Hund24960 Selenicereus undatus
Lalb_Chr05g0221801 Lupinus albus
Lalb_Chr09g0330451 Lupinus albus
Lalb_Chr10g0104371 Lupinus albus
Lalb_Chr14g0370761 Lupinus albus
Lalb_Chr17g0346131 Lupinus albus
Lalb_Chr22g0353371 Lupinus albus
Lj2g0013992 Lotus japonicus
Lj3C866T11 Lonicera japonica
Lj4g0004392 Lotus japonicus
Lj4P263T48 Lonicera japonica
Lj5A155T96 Lonicera japonica
Lj6g0005170 Lotus japonicus
Lj6g0008513 Lotus japonicus
Lj6P742T14 Lonicera japonica
LjContig00141g0028216 Lotus japonicus
Lsat_1_v5_gn_2_12280 Lactuca sativa
Lsat_1_v5_gn_2_12341 Lactuca sativa
Lsat_1_v5_gn_2_69361 Lactuca sativa
Lsat_1_v5_gn_3_55821 Lactuca sativa
Lsat_1_v5_gn_3_64520 Lactuca sativa
Lsat_1_v5_gn_8_145000 Lactuca sativa
Lsat_1_v5_gn_8_44400 Lactuca sativa
Manes.01G118200 Manihot esculenta
Manes.02G076600 Manihot esculenta
Manes.09G031800 Manihot esculenta
Manes.15G131700 Manihot esculenta
Manes.17G080900 Manihot esculenta
MBI12_g17286_MAGBIO Magnolia biondii
MBI19_g20071_MAGBIO Magnolia biondii
MD06G1230400 Malus domestica
MD09G1263200 Malus domestica
MD13G1021100 Malus domestica
MD14G1235000 Malus domestica
MD16G1022400 Malus domestica
MD17G1258400 Malus domestica
Medtr3g065570 Medicago truncatula
Medtr5g078330 Medicago truncatula
Medtr6g079520 Medicago truncatula
Medtr8g106980 Medicago truncatula
MELO3C000609.2 Cucumis melo
MELO3C020191.2 Cucumis melo
Migut.D01563 Erythranthe guttata
Migut.H02263 Erythranthe guttata
Migut.K00900 Erythranthe guttata
Migut.L00405 Erythranthe guttata
Migut.L00410 Erythranthe guttata
Migut.L00507 Erythranthe guttata
MSTRG.15672 Avicennia marina
MSTRG.2614 Avicennia marina
MSTRG.4568 Avicennia marina
MSTRG.7614 Avicennia marina
MSTRG.9293 Avicennia marina
Nitab4.5_0000201g0200 Nicotiana tabacum
Nitab4.5_0000574g0040 Nicotiana tabacum
Nitab4.5_0000916g0110 Nicotiana tabacum
Nitab4.5_0001986g0050 Nicotiana tabacum
Nitab4.5_0002364g0060 Nicotiana tabacum
Nitab4.5_0004028g0030 Nicotiana tabacum
Nitab4.5_0004679g0060 Nicotiana tabacum
Nitab4.5_0007567g0040 Nicotiana tabacum
Nitab4.5_0010112g0010 Nicotiana tabacum
Nitab4.5_0010650g0010 Nicotiana tabacum
Nn3g18299 Nelumbo nucifera
Nn4g24189 Nelumbo nucifera
Nn4g24262 Nelumbo nucifera
Oeu002131.1 Olea europaea
Oeu026293.1 Olea europaea
Oeu026294.1 Olea europaea
Oeu031139.1 Olea europaea
Oeu046177.1 Olea europaea
Oeu059518.1 Olea europaea
Oeu062633.1 Olea europaea
Oeu062635.1 Olea europaea
Os05g0597200 Oryza sativa ssp. japonica
Os08g0428800 Oryza sativa ssp. japonica
Os09g0402100 Oryza sativa ssp. japonica
Peaxi162Scf00196g00048 Petunia axillaris
Peaxi162Scf00683g00148 Petunia axillaris
Peaxi162Scf00723g00045 Petunia axillaris
Peaxi162Scf01350g00014 Petunia axillaris
PGR004G0693 Punica granatum
PGR083G2772 Punica granatum
PGR102G2096 Punica granatum
PGSC0003DMG400005735 Solanum tuberosum
PGSC0003DMG400014590 Solanum tuberosum
PGSC0003DMG400015685 Solanum tuberosum
PGSC0003DMG400029519 Solanum tuberosum
Phvul.001G230300 Phaseolus vulgaris
Phvul.002G328400 Phaseolus vulgaris
Phvul.004G151300 Phaseolus vulgaris
Phvul.008G235600 Phaseolus vulgaris
Phvul.008G236000 Phaseolus vulgaris
Potri.004G087500 Populus trichocarpa
Potri.008G132400 Populus trichocarpa
Potri.010G109600 Populus trichocarpa
Potri.012G048500 Populus trichocarpa
Potri.015G040200 Populus trichocarpa
Potri.017G129400 Populus trichocarpa
Prupe.1G330600 Prunus persica
Prupe.3G161100 Prunus persica
Prupe.5G231600 Prunus persica
Psat0s1687g0040 Pisum sativum
Psat1g033000 Pisum sativum
Psat7g003080 Pisum sativum
PSO017G4429 Papaver somniferum
PSO017G6930 Papaver somniferum
PSO170G5399 Papaver somniferum
PSO478G0184 Papaver somniferum
PSO478G1517 Papaver somniferum
QL02p058120 Quercus lobata
QL03p034015 Quercus lobata
QL10p028134 Quercus lobata
QL93p0100_0499 Quercus lobata
RcHm_v2.0_Chr1g0337641 Rosa chinensis
RcHm_v2.0_Chr3g0493151 Rosa chinensis
RcHm_v2.0_Chr4g0443521 Rosa chinensis
RcHm_v2.0_Chr7g0178581 Rosa chinensis
Rhsim08G0132500 Rhododendron simsii
Rhsim09G0093400 Rhododendron simsii
Sabra04G0058400 Salix brachista
Sabra08G0101000 Salix brachista
Sabra10G0080100 Salix brachista
Sabra12G0034100 Salix brachista
Sabra15G0056800 Salix brachista
Sabra15G0068400 Salix brachista
Sabra17G0107800 Salix brachista
SalBow1G0879 Salvia bowleyana
SalBow1G4743 Salvia bowleyana
SalBow5G1862 Salvia bowleyana
SalBow5G2005 Salvia bowleyana
SalBow5G2321 Salvia bowleyana
SalBow5G2962 Salvia bowleyana
SalBow5G3153 Salvia bowleyana
SalBow5G3720 Salvia bowleyana
SalBow8G3625 Salvia bowleyana
Sc11g0001020 Simmondsia chinensis
Sc12g0007140 Simmondsia chinensis
Sed0021324 Sechium edule
Sed0021982 Sechium edule
Sed0022114 Sechium edule
Sed0026446 Sechium edule
SGA_v2.0_scaffold168G38497 Striga asiatica
SGA_v2.0_scaffold171G38920 Striga asiatica
SGA_v2.0_scaffold2G00935 Striga asiatica
SGA_v2.0_scaffold45G17184 Striga asiatica
SGA_v2.0_scaffold50G18469 Striga asiatica
SGA_v2.0_scaffold59G20702 Striga asiatica
SHI50806 Sapria himalayana
Solyc03g119130.3 Solanum lycopersicum
Solyc04g007890.3 Solanum lycopersicum
Solyc11g011160.1 Solanum lycopersicum
Sopen00g010880 Solanum pennellii
Sopen00g014070 Solanum pennellii
Sopen03g038020 Solanum pennellii
Sopen04g003030 Solanum pennellii
Sopen05g029670 Solanum pennellii
Sopen11g005920 Solanum pennellii
Sp1g13340 Schrenkiella parvula
Sp1g35590 Schrenkiella parvula
Sp2g13050 Schrenkiella parvula
Sp3g16150 Schrenkiella parvula
TAR371G1156 Trochodendron aralioides
TAR374G1087 Trochodendron aralioides
TAR622G0364 Trochodendron aralioides
TAR622G1365 Trochodendron aralioides
TAR622G1368 Trochodendron aralioides
TAR629G1426 Trochodendron aralioides
THA.LOC104805075 Tarenaya hassleriana
THA.LOC104821833 Tarenaya hassleriana
THA.LOC104824134 Tarenaya hassleriana
Thecc.02G288200 Theobroma cacao
Thecc.03G053100 Theobroma cacao
Thecc.04G115000 Theobroma cacao
Thhalv10004909m.g Eutrema salsugineum
Thhalv10008756m.g Eutrema salsugineum
Thhalv10011410m.g Eutrema salsugineum
Thhalv10020566m.g Eutrema salsugineum
TPR.G12869 Trifolium pratense
TPR.G24921 Trifolium pratense
TPR.G8262 Trifolium pratense
TPR.G8621 Trifolium pratense
TWI53G0855 Tripterygium wilfordii
TWI74G0359 Tripterygium wilfordii
TWI74G0932 Tripterygium wilfordii
TWI77G0347 Tripterygium wilfordii
TWI81G0813 Tripterygium wilfordii
unitig_746.g26886 Utricularia gibba
unitig_748.g8471 Utricularia gibba
unitig_899.g15632 Utricularia gibba
vmacro10672 Vaccinium macrocarpon
vmacro17784 Vaccinium macrocarpon
VMungo0251G1191 Vigna mungo
VMungo0464G0769 Vigna mungo
VMungo0464G1650 Vigna mungo
VMungo0647G1272 Vigna mungo
Zm00001eb041850 Zea mays
Zm00001eb179440 Zea mays
Zm00001eb279020 Zea mays
Zm00001eb312190 Zea mays

User provided reference genes

Program Settings