Gene: AT1G48620
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G48620
- Transcript Identifier AT1G48620.1
- Gene Type Coding gene
- Location Chr1 : 17974148-17976301 : negative
Gene Family Information
- ID HOM05D003305
- #Genes/#Species 207/81
- Phylogenetic origin
- ID ORTHO05D001298
- #Genes/#Species 437/91
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G48620.1
- symbol HON5
- uniprot Q4V3D1
Descriptions
- Description high mobility group A5
- Computational description high mobility group A5 (HON5); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleolus, nucleus, chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 6279 Blast hits to 5122 proteins in 583 species: Archae - 2; Bacteria - 683; Metazoa - 2480; Fungi - 1082; Plants - 1303; Viruses - 190; Other Eukaryotes - 539 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0045910 | IBA | Gene Ontology | negative regulation of DNA recombination | 1 |
GO:0006334 | IEA | Gene Ontology | nucleosome assembly | |
GO:0006334 | IEA | InterPro | nucleosome assembly | |
GO:0030261 | IBA | Gene Ontology | chromosome condensation | 1 |
GO:0031936 | IBA | Gene Ontology | negative regulation of chromatin silencing | 1 |
GO:0016584 | IBA | Gene Ontology | nucleosome positioning | 1 |
GO:0009294 | IMP | Gene Ontology | DNA mediated transformation | 2 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | IEA | GOA Database | DNA binding | |
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0003690 | IBA | Gene Ontology | double-stranded DNA binding | 1 |
GO:0031492 | IBA | Gene Ontology | nucleosomal DNA binding | 1 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0000786 | IEA | Gene Ontology | nucleosome | |
GO:0000786 | IEA | InterPro | nucleosome | |
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | HDA IBA | Gene Ontology | nucleus | 1 3 |
GO:0005730 | IDA | GOA Database | nucleolus | |
GO:0005730 | HDA IBA | Gene Ontology | nucleolus | 1 4 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
35.1 | not assigned.annotated |