Gene: AT1G48620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G48620
  • Transcript Identifier AT1G48620.1
  • Gene Type Coding gene
  • Location Chr1 : 17974148-17976301 : negative

Gene Family Information

  • ID HOM05D003305
  • #Genes/#Species 207/81
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G48620.1
  • symbol HON5
  • uniprot Q4V3D1

Descriptions

  • Description high mobility group A5
  • Computational description high mobility group A5 (HON5); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleolus, nucleus, chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 6279 Blast hits to 5122 proteins in 583 species: Archae - 2; Bacteria - 683; Metazoa - 2480; Fungi - 1082; Plants - 1303; Viruses - 190; Other Eukaryotes - 539 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045910
IBA
Gene Ontologynegative regulation of DNA recombination1
GO:0006334
IEA
Gene Ontologynucleosome assembly
GO:0006334
IEA
InterPronucleosome assembly
GO:0030261
IBA
Gene Ontologychromosome condensation1
GO:0031936
IBA
Gene Ontologynegative regulation of chromatin silencing1
GO:0016584
IBA
Gene Ontologynucleosome positioning1
GO:0009294
IMP
Gene OntologyDNA mediated transformation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003690
IBA
Gene Ontologydouble-stranded DNA binding1
GO:0031492
IBA
Gene Ontologynucleosomal DNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
Gene Ontologynucleosome
GO:0000786
IEA
InterPronucleosome
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
HDA
IBA
Gene Ontologynucleus1 3
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
IBA
Gene Ontologynucleolus1 4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017956 AT hook, DNA-binding motif
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR005818 Linker histone H1/H5, domain H15
IPR036390 Winged helix DNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated