Gene: Os08g0428800
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os08g0428800
- Transcript Identifier Os08t0428800-00
- Gene Type Coding gene
- Location chr08 : 20657329-20657933 : negative
Gene Family Information
- ID HOM05D002447
- #Genes/#Species 278/90
- Phylogenetic origin
- ID ORTHO05D001298
- #Genes/#Species 437/91
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Os08t0428800-00
- MSU-ID LOC_Os08g33190.1
- uniprot Q8H3M0
Descriptions
- Description Similar to High mobility group I/Y-2.
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016584 | IBA | GOA Database | nucleosome positioning | |
| GO:2000014 | ISO | PLAZA Integrative Orthology | regulation of endosperm development | Zm00001eb041850 |
| GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT1G48620 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0006334 | IEA | GOA Database | nucleosome assembly | |
| GO:0006334 | IEA | InterPro | nucleosome assembly | |
| GO:0030261 | IBA | GOA Database | chromosome condensation | |
| GO:0031936 | IBA | GOA Database | negative regulation of chromatin silencing | |
| GO:0045910 | IBA | GOA Database | negative regulation of DNA recombination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | Zm00001eb041850 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0031492 | IBA | GOA Database | nucleosomal DNA binding | |
| GO:0003690 | IBA | GOA Database | double-stranded DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G14900 |
| GO:0000785 | IEA | GOA Database | chromatin | |
| GO:0000785 | IEA | InterPro | chromatin | |
| GO:0005634 | IBA IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005730 | IBA | GOA Database | nucleolus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005818 | Linker histone H1/H5, domain H15 |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR031059 | High mobility group protein HMGA, plant |
| IPR017956 | AT hook, DNA-binding motif |
| IPR000116 | High mobility group protein HMGA |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |