Gene: Solyc11g011160.1
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g011160.1
- Transcript Identifier Solyc11g011160.1.1
- Gene Type Coding gene
- Location SL4.0ch11 : 4268668-4270113 : negative
Gene Family Information
- ID HOM05D002447
- #Genes/#Species 278/90
- Phylogenetic origin
- ID ORTHO05D001298
- #Genes/#Species 437/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc11g011160.1.1
- uniprot K4D5S3
- gene_id Solyc11g011160
Descriptions
- Description HMG-Y-related protein A-like (AHRD V3.3 *** A0A2G2Y4T4_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:2000014 | ISO | PLAZA Integrative Orthology | regulation of endosperm development | Zm00001eb041850 |
GO:0045910 | IBA | GOA Database | negative regulation of DNA recombination | |
GO:0031936 | IBA | GOA Database | negative regulation of chromatin silencing | |
GO:0016584 | IBA | GOA Database | nucleosome positioning | |
GO:0030261 | IBA | GOA Database | chromosome condensation | |
GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
GO:0006334 | IEA | GOA Database | nucleosome assembly | |
GO:0006334 | IEA | InterPro | nucleosome assembly |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | Zm00001eb041850 |
GO:0003690 | IBA | GOA Database | double-stranded DNA binding | |
GO:0031492 | IBA | GOA Database | nucleosomal DNA binding | |
GO:0003677 | IEA | GOA Database | DNA binding | |
GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0000785 | IEA | GOA Database | chromatin | |
GO:0000785 | IEA | InterPro | chromatin | |
GO:0005829 | ISO | PLAZA Tree-based Orthology | cytosol | AT1G14900 |
GO:0005730 | IBA | GOA Database | nucleolus | |
GO:0005634 | IBA IEA | GOA Database | nucleus | |
GO:0005634 | IEA | InterPro | nucleus | |
GO:0000786 | IEA | GOA Database | nucleosome | |
GO:0000786 | IEA | InterPro | nucleosome |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
35.2 | not assigned.not annotate |