Gene: PGR102G2096

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR102G2096
  • Transcript Identifier PGR102G2096.01
  • Gene Type Coding gene
  • Location NC_045129.1 : 26669938-26670649 : negative

Gene Family Information

  • ID HOM05D002447
  • #Genes/#Species 278/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031389175.1
  • name LOC116201873
  • name XM_031533315.1
  • id gene-LOC116201873
  • uniprot A0A218XAK2

Descriptions

  • product HMG-Y-related protein A-like
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006334
IEA
GOA Databasenucleosome assembly
GO:0006334
IEA
InterPronucleosome assembly
GO:2000014
ISO
PLAZA Integrative Orthologyregulation of endosperm development Zm00001eb041850
GO:0006355
ISO
PLAZA Homology (enrichment)regulation of transcription, DNA-templated HOM05D002447

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding Zm00001eb041850

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0000786
IEA
GOA Databasenucleosome
GO:0000786
IEA
InterPronucleosome
GO:0005694
IEA
GOA Databasechromosome
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G14900
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus Zm00001eb041850
GO:0000785
ISO
PLAZA Integrative Orthologychromatin AT1G14900

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR031059 High mobility group protein HMGA, plant
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR005818 Linker histone H1/H5, domain H15
IPR017956 AT hook, DNA-binding motif
IPR036390 Winged helix DNA-binding domain superfamily
IPR005819 Linker histone H1/H5
Mapman id Description
35.1 not assigned.annotated