Gene: Solyc04g007890.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g007890.3
  • Transcript Identifier Solyc04g007890.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 1597404-1598026 : positive

Gene Family Information

  • ID HOM05D002447
  • #Genes/#Species 278/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g007890.3.1
  • uniprot A0A3Q7GNX5
  • gene_id Solyc04g007890

Descriptions

  • Description Hmg-y-related protein a (AHRD V3.3 *-* A0A314LC60_NICAT)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000014
ISO
PLAZA Integrative Orthologyregulation of endosperm development Zm00001eb041850
GO:0030261
IBA
GOA Databasechromosome condensation
GO:0016584
IBA
GOA Databasenucleosome positioning
GO:0031936
IBA
GOA Databasenegative regulation of chromatin silencing
GO:0045910
IBA
GOA Databasenegative regulation of DNA recombination
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006334
IEA
GOA Databasenucleosome assembly
GO:0006334
IEA
InterPronucleosome assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding Zm00001eb041850
GO:0031492
IBA
GOA Databasenucleosomal DNA binding
GO:0003690
IBA
GOA Databasedouble-stranded DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000785
IEA
GOA Databasechromatin
GO:0000785
IEA
InterProchromatin
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G14900
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005730
IBA
GOA Databasenucleolus
GO:0000786
IEA
GOA Databasenucleosome
GO:0000786
IEA
InterPronucleosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017956 AT hook, DNA-binding motif
IPR031059 High mobility group protein HMGA, plant
IPR036390 Winged helix DNA-binding domain superfamily
IPR005818 Linker histone H1/H5, domain H15
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR000116 High mobility group protein HMGA
Mapman id Description
35.1 not assigned.annotated