Gene: PGR004G0693
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR004G0693
- Transcript Identifier PGR004G0693.01
- Gene Type Coding gene
- Location NC_045131.1 : 304395-305993 : negative
Gene Family Information
- ID HOM05D002447
- #Genes/#Species 278/90
- Phylogenetic origin
- ID ORTHO05D001298
- #Genes/#Species 437/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031396923.1
- name LOC116207931
- name XM_031541063.1
- id gene-LOC116207931
- uniprot A0A6P8DX88
Descriptions
- product HMG-Y-related protein A-like
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006334 | IEA | GOA Database | nucleosome assembly | |
| GO:0006334 | IEA | InterPro | nucleosome assembly | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:2000014 | ISO | PLAZA Integrative Orthology | regulation of endosperm development | Zm00001eb041850 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | Zm00001eb041850 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0000785 | IEA | GOA Database | chromatin | |
| GO:0000785 | IEA | InterPro | chromatin | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005829 | ISO | PLAZA Tree-based Orthology | cytosol | AT1G14900 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | Zm00001eb041850 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR017956 | AT hook, DNA-binding motif |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR005818 | Linker histone H1/H5, domain H15 |
| IPR000116 | High mobility group protein HMGA |
| IPR031059 | High mobility group protein HMGA, plant |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |