Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Potri.003G212400	Populus trichocarpa	HOM04x5M004872	ORTHO04x5M006409	1.1e-123	445.3	225	100.0
Potri.001G013700	Populus trichocarpa	HOM04x5M004872	ORTHO04x5M006409	2.3e-113	411.0	225	91.1
AT5G19630	Arabidopsis thaliana	HOM04x5M004872	ORTHO04x5M006409	4.7e-90	333.6	227	70.0
CALSI_Maker00010717	Calamus simplicifolius	HOM04x5M004872	ORTHO04x5M006409	4.9e-87	323.6	219	73.5
Solyc01g006480.2	Solanum lycopersicum	HOM04x5M004872	ORTHO04x5M006409	5.4e-86	320.1	232	68.1
Aco018514	Ananas comosus	HOM04x5M004872	ORTHO04x5M006409	3.5e-85	317.4	219	71.2
p5.00_sc00131_p0016	Elaeis guineensis	HOM04x5M004872	ORTHO04x5M006409	8.7e-84	312.8	219	70.8
Oropetium_20150105_19239	Oropetium thomaeum	HOM04x5M004872	ORTHO04x5M006409	7.3e-83	309.7	219	70.3
TraesCS6D02G260600	Triticum aestivum	HOM04x5M004872	ORTHO04x5M006409	1.3e-82	308.9	219	68.5
TraesCS6B02G309100	Triticum aestivum	HOM04x5M004872	ORTHO04x5M006409	3.6e-82	307.4	219	68.0
Sspon.04G0023000-2C	Saccharum spontaneum	HOM04x5M004872	ORTHO04x5M006409	6.2e-82	306.6	222	69.4
Ma09_g18700	Musa acuminata	HOM04x5M004872	ORTHO04x5M006409	8.1e-82	306.2	219	70.3
TRITD6Bv1G164750	Triticum turgidum	HOM04x5M004872	ORTHO04x5M006409	1.1e-81	305.8	219	67.6
Sobic.004G260400	Sorghum bicolor	HOM04x5M004872	ORTHO04x5M006409	1.8e-81	305.1	224	68.3
LP019388	Lolium perenne	HOM04x5M004872	ORTHO04x5M006409	2.4e-81	304.7	219	67.6
OB02G37350	Oryza brachyantha	HOM04x5M004872	ORTHO04x5M006409	2.4e-81	304.7	225	67.1
PEQU_04097	Phalaenopsis equestris	HOM04x5M004872	ORTHO04x5M006409	2.4e-81	304.7	219	68.9
Sspon.06G0018640-2C	Saccharum spontaneum	HOM04x5M004872	ORTHO04x5M006409	2.4e-81	304.7	222	68.9
Zosma45g00430	Zostera marina	HOM04x5M004872	ORTHO04x5M006409	3.1e-81	304.3	220	68.6
Seita.1G296500	Setaria italica	HOM04x5M004872	ORTHO04x5M006409	4.0e-81	303.9	222	68.9
Bradi3g53390	Brachypodium distachyon	HOM04x5M004872	ORTHO04x5M006409	6.9e-81	303.1	219	68.0
ATR0605G157	Amborella trichopoda	HOM04x5M004872	ORTHO04x5M006409	2.0e-80	301.6	225	67.6
LOC_Os02g48590	Oryza sativa ssp. japonica	HOM04x5M004872	ORTHO04x5M006409	2.0e-80	301.6	221	67.9
OsR498G0204654300.01	Oryza sativa ssp. indica	HOM04x5M004872	ORTHO04x5M006409	2.0e-80	301.6	221	67.9
Zm00001d017845	Zea mays B73	HOM04x5M004872	ORTHO04x5M006409	2.0e-80	301.6	224	67.4
Zm00007a00039625	Zea mays B104	HOM04x5M004872	ORTHO04x5M006409	2.0e-80	301.6	224	67.4
Zm00008a022825	Zea mays PH207	HOM04x5M004872	ORTHO04x5M006409	2.0e-80	301.6	224	67.4
Pgl_GLEAN_10011763	Cenchrus americanus	HOM04x5M004872	ORTHO04x5M006409	3.4e-80	300.8	222	68.5
TraesCS6A02G280400	Triticum aestivum	HOM04x5M004872	ORTHO04x5M006409	3.4e-80	300.8	219	67.1
TRITD6Av1G176140	Triticum turgidum	HOM04x5M004872	ORTHO04x5M006409	3.4e-80	300.8	219	67.1
Sspon.04G0023000-1B	Saccharum spontaneum	HOM04x5M004872	ORTHO04x5M006409	7.6e-80	299.7	217	69.6
PH01000062G1350	Phyllostachys edulis	HOM04x5M004872	ORTHO04x5M006409	9.9e-80	299.3	209	69.9
HORVU6Hr1G070500	Hordeum vulgare	HOM04x5M004872	ORTHO04x5M006409	1.4e-78	295.4	219	66.7
Zjn_sc00007.1.g06800.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004872	ORTHO04x5M006409	7.1e-78	293.1	213	70.0
ASH_gene20440	Apostasia shenzhenica	HOM04x5M004872	ORTHO04x5M006409	2.1e-77	291.6	219	64.8
Spipo12G0037700	Spirodela polyrhiza	HOM04x5M004872	ORTHO04x5M006409	2.1e-77	291.6	220	65.9
Solyc03g063290.2	Solanum lycopersicum	HOM04x5M004872	ORTHO04x5M006409	1.1e-75	285.8	224	63.4
gene11843	Selaginella moellendorffii	HOM04x5M004872	ORTHO04x5M006409	6.9e-73	276.6	220	60.0
gene10592	Selaginella moellendorffii	HOM04x5M004872	ORTHO04x5M006409	3.4e-72	274.2	220	59.5
Zjn_sc00022.1.g03150.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004872	ORTHO04x5M006409	4.5e-72	273.9	214	65.4
Pp3c7_25270	Physcomitrium patens	HOM04x5M004872	ORTHO04x5M006409	1.3e-71	272.3	224	60.3
Pp3c25_340	Physcomitrium patens	HOM04x5M004872	ORTHO04x5M006409	1.9e-70	268.5	219	56.6
Mapoly0046s0043	Marchantia polymorpha	HOM04x5M004872	ORTHO04x5M006409	7.1e-70	266.5	219	57.1
evm.TU.AsparagusV1_05.1461.V1.1	Asparagus officinalis	HOM04x5M004872	ORTHO04x5M006409	3.9e-68	260.8	249	55.4
GSVIVG01025354001	Vitis vinifera	HOM04x5M004872	ORTHO04x5M006409	1.8e-65	251.9	153	79.1
Sspon.06G0018640-1A	Saccharum spontaneum	HOM04x5M004872	ORTHO04x5M006409	7.6e-64	246.5	189	68.3
PAB00008174	Picea abies	HOM04x5M004872	ORTHO04x5M006409	4.7e-37	157.5	109	66.1
Zjn_sc00007.1.g06790.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M004872	ORTHO04x5M006409	7.7e-32	140.2	114	63.2
MisinT256800	Miscanthus sinensis	HOM04x5M004872	ORTHO04x5M006409	6.5e-31	137.1	116	60.3
Ma09_g28280	Musa acuminata	HOM04x5M004872	ORTHO04x5M006409	2.3e-28	128.6	100	66.0
Misin08G263100	Miscanthus sinensis	HOM04x5M004872	ORTHO04x5M006409	9.7e-27	123.2	120	54.2
Sspon.02G0016970-1A	Saccharum spontaneum	HOM04x5M004872	ORTHO04x5M006409	2.8e-26	121.7	117	53.8
PH01000215G1010	Phyllostachys edulis	HOM04x5M002519	ORTHO04x5M002785	9.1e-25	116.7	70	78.6
PH01021915G0010	Phyllostachys edulis	HOM04x5M004872	ORTHO04x5M006409	4.5e-24	114.4	96	61.5
Sspon.02G0016970-2D	Saccharum spontaneum	HOM04x5M004872	ORTHO04x5M006409	4.2e-14	81.3	79	53.2
Potri.006G191700	Populus trichocarpa	HOM04x5M004872	ORTHO04x5M187245	6.3e-10	67.4	76	42.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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