Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
PAB00016317	Picea abies	HOM04x5M004235	ORTHO04x5M004910	8.0e-119	429.1	218	100.0
ATR0681G033	Amborella trichopoda	HOM04x5M004235	ORTHO04x5M004910	4.9e-76	287.0	214	69.2
GSVIVG01030979001	Vitis vinifera	HOM04x5M004235	ORTHO04x5M004910	3.2e-75	284.3	215	70.2
Solyc02g086340.2	Solanum lycopersicum	HOM04x5M004235	ORTHO04x5M004910	5.6e-72	273.5	216	66.2
CALSI_Maker00032109	Calamus simplicifolius	HOM04x5M004235	ORTHO04x5M004910	2.8e-71	271.2	216	65.7
AT5G16210	Arabidopsis thaliana	HOM04x5M004235	ORTHO04x5M004910	3.4e-69	264.2	215	65.1
p5.00_sc00008_p0064	Elaeis guineensis	HOM04x5M004235	ORTHO04x5M004910	4.5e-69	263.8	214	65.9
Ma04_g06740	Musa acuminata	HOM04x5M004235	ORTHO04x5M004910	4.9e-68	260.4	214	63.6
Zosma112g00450	Zostera marina	HOM04x5M004235	ORTHO04x5M004910	5.1e-65	250.4	213	62.0
Seita.5G180700	Setaria italica	HOM04x5M004235	ORTHO04x5M004910	3.3e-64	247.7	210	62.9
Ma04_g13700	Musa acuminata	HOM04x5M004235	ORTHO04x5M004910	1.1e-62	242.7	214	59.8
Zm00001d009336	Zea mays B73	HOM04x5M004235	ORTHO04x5M004910	2.4e-62	241.5	212	60.8
Spipo18G0037100	Spirodela polyrhiza	HOM04x5M004235	ORTHO04x5M004910	3.1e-62	241.1	214	60.3
TraesCS3B02G228000	Triticum aestivum	HOM04x5M004235	ORTHO04x5M004910	1.2e-61	239.2	216	61.1
OB01G27190	Oryza brachyantha	HOM04x5M004235	ORTHO04x5M004910	1.5e-61	238.8	218	59.6
LOC_Os01g33060	Oryza sativa ssp. japonica	HOM04x5M004235	ORTHO04x5M004910	2.0e-61	238.4	214	59.8
OsR498G0101112100.01	Oryza sativa ssp. indica	HOM04x5M004235	ORTHO04x5M004910	2.0e-61	238.4	214	59.8
Bradi2g13730	Brachypodium distachyon	HOM04x5M004235	ORTHO04x5M004910	3.4e-61	237.7	214	60.3
TraesCS3D02G196800	Triticum aestivum	HOM04x5M004235	ORTHO04x5M004910	7.7e-61	236.5	214	61.2
TRITD3Bv1G108230	Triticum turgidum	HOM04x5M004235	ORTHO04x5M004910	7.7e-61	236.5	214	61.2
TRITD3Av1G117080	Triticum turgidum	HOM04x5M004235	ORTHO04x5M004910	7.7e-61	236.5	214	61.2
HORVU3Hr1G043640	Hordeum vulgare	HOM04x5M004235	ORTHO04x5M004910	1.7e-60	235.3	214	60.7
TraesCS3A02G198800	Triticum aestivum	HOM04x5M004235	ORTHO04x5M004910	3.8e-60	234.2	226	58.4
Sspon.03G0008820-2B	Saccharum spontaneum	HOM04x5M004235	ORTHO04x5M004910	1.9e-59	231.9	210	60.5
Sspon.03G0008820-1P	Saccharum spontaneum	HOM04x5M004235	ORTHO04x5M004910	1.9e-59	231.9	210	60.5
Misin05G160200	Miscanthus sinensis	HOM04x5M004235	ORTHO04x5M004910	2.5e-59	231.5	210	60.0
Zosma10g01700	Zostera marina	HOM04x5M004235	ORTHO04x5M004910	3.2e-59	231.1	215	57.7
Sobic.003G171400	Sorghum bicolor	HOM04x5M004235	ORTHO04x5M004910	4.2e-59	230.7	210	58.6
Sspon.03G0008830-1A	Saccharum spontaneum	HOM04x5M004235	ORTHO04x5M004910	5.1e-57	223.8	215	58.1
Sspon.03G0008820-1A	Saccharum spontaneum	HOM04x5M004235	ORTHO04x5M004910	5.1e-57	223.8	215	58.1
PEQU_18925	Phalaenopsis equestris	HOM04x5M004235	ORTHO04x5M004910	1.1e-56	222.6	211	58.8
Mapoly0103s0005	Marchantia polymorpha	HOM04x5M004235	ORTHO04x5M004910	8.2e-55	216.5	214	55.1
ASH_gene5899	Apostasia shenzhenica	HOM04x5M004235	ORTHO04x5M004910	1.1e-54	216.1	303	43.6
Zjn_sc00156.1.g00280.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004235	ORTHO04x5M004910	3.1e-46	188.0	217	51.2
Aco018711	Ananas comosus	HOM04x5M004235	ORTHO04x5M004910	2.2e-44	181.8	158	60.1
Oropetium_20150105_25415	Oropetium thomaeum	HOM04x5M004235	ORTHO04x5M004910	2.1e-42	175.3	178	55.1
Pp3c18_21850	Physcomitrium patens	HOM04x5M004235	ORTHO04x5M004910	5.7e-40	167.2	206	47.6
Pp3c18_21770	Physcomitrium patens	HOM04x5M004235	ORTHO04x5M004910	5.7e-40	167.2	206	47.6
Zm00007a00022697	Zea mays B104	HOM04x5M004235	ORTHO04x5M004910	5.9e-37	157.1	157	56.1
Pp3c3_38010	Physcomitrium patens	HOM04x5M004235	ORTHO04x5M004910	3.8e-36	154.5	212	44.3
gene35017	Selaginella moellendorffii	HOM04x5M004235	ORTHO04x5M004910	8.5e-36	153.3	202	45.5
gene4661	Selaginella moellendorffii	HOM04x5M004235	ORTHO04x5M004910	2.5e-35	151.8	202	45.5
Pgl_GLEAN_10003830	Cenchrus americanus	HOM04x5M004235	ORTHO04x5M004910	9.1e-30	133.3	183	44.8
Zm00008a030606	Zea mays PH207	HOM04x5M004235	ORTHO04x5M004910	1.6e-26	122.5	148	50.7
Misin06G150500	Miscanthus sinensis	HOM04x5M004235	ORTHO04x5M004910	1.4e-25	119.4	73	78.1
HORVU3Hr1G043690	Hordeum vulgare	HOM04x5M004235	ORTHO04x5M004910	8.8e-25	116.7	112	57.1
PH01000404G0290	Phyllostachys edulis	HOM04x5M004235	ORTHO04x5M004910	1.6e-18	95.9	96	54.2
Misin06G150600	Miscanthus sinensis	HOM04x5M004235	ORTHO04x5M004910	8.3e-15	83.6	56	69.6
PH01000404G0310	Phyllostachys edulis	HOM04x5M004235	ORTHO04x5M004910	1.8e-09	65.9	41	70.7
Potri.004G095900	Populus trichocarpa	HOM04x5M004235	ORTHO04x5M004910	1.8e-09	65.9	36	83.3
Cre03.g205137	Chlamydomonas reinhardtii	HOM04x5M004235	ORTHO04x5M004910	1.2e-08	63.2	87	44.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment