Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
PAB00015820	Picea abies	HOM04x5M005046	ORTHO04x5M006164	3.2e-225	783.5	413	100.0
Aco003438	Ananas comosus	HOM04x5M005046	ORTHO04x5M006164	2.5e-177	624.4	416	73.8
CALSI_Maker00005878	Calamus simplicifolius	HOM04x5M005046	ORTHO04x5M006164	7.9e-176	619.4	416	73.1
p5.00_sc00006_p0154	Elaeis guineensis	HOM04x5M005046	ORTHO04x5M006164	1.4e-175	618.6	410	73.4
Ma02_g07730	Musa acuminata	HOM04x5M005046	ORTHO04x5M006164	3.0e-175	617.5	413	71.9
evm.TU.AsparagusV1_07.3669.V1.1	Asparagus officinalis	HOM04x5M005046	ORTHO04x5M006164	2.8e-173	610.9	411	73.0
GSVIVG01019608001	Vitis vinifera	HOM04x5M005046	ORTHO04x5M006164	2.8e-173	610.9	414	72.5
Potri.003G143700	Populus trichocarpa	HOM04x5M005046	ORTHO04x5M006164	8.2e-173	609.4	413	72.4
Potri.001G087400	Populus trichocarpa	HOM04x5M005046	ORTHO04x5M006164	2.4e-172	607.8	413	71.7
PEQU_08732	Phalaenopsis equestris	HOM04x5M005046	ORTHO04x5M006164	7.0e-172	606.3	413	71.2
ATR1098G082	Amborella trichopoda	HOM04x5M005046	ORTHO04x5M006164	1.1e-169	599.0	387	74.9
OB07G13280	Oryza brachyantha	HOM04x5M005046	ORTHO04x5M006164	4.7e-168	593.6	413	70.2
LOC_Os07g07260	Oryza sativa ssp. japonica	HOM04x5M005046	ORTHO04x5M006164	4.7e-168	593.6	417	70.5
OsR498G0713585300.01	Oryza sativa ssp. indica	HOM04x5M005046	ORTHO04x5M006164	4.7e-168	593.6	417	70.5
Solyc08g082830.2	Solanum lycopersicum	HOM04x5M005046	ORTHO04x5M006164	1.0e-167	592.4	414	70.8
Zosma8g00780	Zostera marina	HOM04x5M005046	ORTHO04x5M006164	1.0e-167	592.4	376	75.3
Misin03G098200	Miscanthus sinensis	HOM04x5M005046	ORTHO04x5M006164	1.4e-167	592.0	411	69.8
Misin04G109200	Miscanthus sinensis	HOM04x5M005046	ORTHO04x5M006164	1.8e-167	591.7	411	69.8
Sobic.002G112700	Sorghum bicolor	HOM04x5M005046	ORTHO04x5M006164	1.8e-167	591.7	411	69.6
Zm00008a008470	Zea mays PH207	HOM04x5M005046	ORTHO04x5M006164	1.8e-167	591.7	413	69.0
Sspon.02G0020200-1A	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	4.0e-167	590.5	408	70.8
Bradi1g29020	Brachypodium distachyon	HOM04x5M005046	ORTHO04x5M006164	5.2e-167	590.1	419	69.2
AT1G55090	Arabidopsis thaliana	HOM04x5M005046	ORTHO04x5M006164	8.8e-167	589.3	411	70.1
TraesCS3B02G090300	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	8.8e-167	589.3	419	69.7
Seita.2G110200	Setaria italica	HOM04x5M005046	ORTHO04x5M006164	1.5e-166	588.6	413	70.2
TraesCS3D02G076500	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	2.0e-166	588.2	419	69.5
gene17841	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	2.6e-166	587.8	412	68.9
HORVU3Hr1G013640	Hordeum vulgare	HOM04x5M005046	ORTHO04x5M006164	3.3e-166	587.4	418	69.6
TraesCS3A02G076400	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	4.4e-166	587.0	419	69.5
LP027001	Lolium perenne	HOM04x5M005046	ORTHO04x5M006164	5.7e-166	586.6	416	70.0
gene29750	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	9.7e-166	585.9	412	68.4
Spipo4G0085100	Spirodela polyrhiza	HOM04x5M005046	ORTHO04x5M006164	4.8e-165	583.6	413	70.0
Mapoly0035s0052	Marchantia polymorpha	HOM04x5M005046	ORTHO04x5M006164	4.2e-161	570.5	411	67.2
Pp3c17_21910	Physcomitrium patens	HOM04x5M005046	ORTHO04x5M006164	4.0e-159	563.9	413	67.1
Sspon.02G0020200-3C	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	2.7e-155	551.2	412	67.2
ASH_gene8283	Apostasia shenzhenica	HOM04x5M005046	ORTHO04x5M006164	1.5e-145	518.8	338	74.3
Zm00001d005157	Zea mays B73	HOM04x5M005046	ORTHO04x5M006164	1.6e-144	515.4	413	62.0
PH01002232G0310	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	1.0e-138	496.1	358	67.3
MCO17G006	Micromonas commoda	HOM04x5M005046	ORTHO04x5M006164	6.6e-138	493.4	380	62.9
TRITD3Bv1G024720	Triticum turgidum	HOM04x5M005046	ORTHO04x5M006164	2.5e-137	491.5	418	61.7
TRITD3Av1G021090	Triticum turgidum	HOM04x5M005046	ORTHO04x5M006164	1.2e-136	489.2	418	61.5
gene12860	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	1.6e-136	488.8	364	65.9
gene4078	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	1.1e-135	486.1	364	65.7
Oropetium_20150105_11454	Oropetium thomaeum	HOM04x5M005046	ORTHO04x5M006164	1.5e-118	429.1	317	66.2
Cre10.g435250	Chlamydomonas reinhardtii	HOM04x5M005046	ORTHO04x5M006164	7.6e-118	426.8	426	52.1
Zm00007a00049707	Zea mays B104	HOM04x5M005046	ORTHO04x5M006164	1.2e-102	376.3	331	58.6
PH01000031G0760	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	7.1e-92	340.5	242	68.6
Sspon.02G0020200-2B	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	3.9e-74	281.6	178	75.8
PH01000031G0750	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	6.6e-37	157.9	152	55.9
PH01002232G0290	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	6.0e-22	108.2	70	75.7
Sspon.02G0020200-4D	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	1.0e-21	107.5	55	89.1
Zm00007a00051183	Zea mays B104	HOM04x5M005046	ORTHO04x5M006164	1.3e-21	107.1	55	87.3
Solyc06g071240.1	Solanum lycopersicum	HOM04x5M005046	ORTHO04x5M006164	4.9e-16	88.6	129	45.0
Zjn_sc00077.1.g00140.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005046	ORTHO04x5M006164	1.3e-13	80.5	75	58.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment