Interactive Phylogenetics Module

Gene Id
LOC_Os08g39980

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
LOC_Os08g39980 Oryza sativa ssp. japonica HOM04x5M002570 ORTHO04x5M002687 9.5e-163 576.6 586 100.0
HORVU7Hr1G050770 Hordeum vulgare HOM04x5M002570 ORTHO04x5M002687 6.0e-93 344.7 604 60.6
OsR498G0816445800.01 Oryza sativa ssp. indica HOM04x5M002570 ORTHO04x5M002687 2.3e-92 342.8 319 100.0
TraesCS7A02G247200 Triticum aestivum HOM04x5M002570 ORTHO04x5M002687 1.1e-91 340.5 601 59.7
TraesCS7D02G245800 Triticum aestivum HOM04x5M002570 ORTHO04x5M002687 2.5e-91 339.3 601 60.4
Seita.6G206100 Setaria italica HOM04x5M002570 ORTHO04x5M002687 4.3e-83 312.0 609 56.3
TraesCS7B02G144300 Triticum aestivum HOM04x5M002570 ORTHO04x5M002687 2.0e-80 303.1 597 60.5
Sobic.007G209500 Sorghum bicolor HOM04x5M002570 ORTHO04x5M002687 1.7e-79 300.1 473 65.3
Misin13G182000 Miscanthus sinensis HOM04x5M002570 ORTHO04x5M002687 1.1e-78 297.4 465 62.8
Misin07G233600 Miscanthus sinensis HOM04x5M002570 ORTHO04x5M002687 5.7e-75 285.0 418 67.0
OB08G26960 Oryza brachyantha HOM04x5M002570 ORTHO04x5M002687 2.2e-74 283.1 528 55.9
Zm00001d031454 Zea mays B73 HOM04x5M002570 ORTHO04x5M002687 1.7e-71 273.5 467 55.2
Zm00007a00022852 Zea mays B104 HOM04x5M002570 ORTHO04x5M002687 1.7e-71 273.5 467 55.2
LP013034 Lolium perenne HOM04x5M002570 ORTHO04x5M002687 1.8e-68 263.5 565 58.6
Sspon.06G0001740-1A Saccharum spontaneum HOM04x5M002570 ORTHO04x5M002687 9.1e-65 251.1 489 61.1
Sspon.06G0001740-2D Saccharum spontaneum HOM04x5M002570 ORTHO04x5M002687 7.7e-64 248.1 474 60.8
Zjn_sc00008.1.g09320.1.am.mk Zoysia japonica ssp. nagirizaki HOM04x5M002412 ORTHO04x5M002551 2.3e-60 236.5 434 53.2
PH01000594G0730 Phyllostachys edulis HOM04x5M002570 ORTHO04x5M002687 9.1e-57 224.6 460 68.7
Bradi4g33820 Brachypodium distachyon HOM04x5M002570 ORTHO04x5M002687 1.7e-55 220.3 385 47.0
Zm00008a028437 Zea mays PH207 HOM04x5M002570 ORTHO04x5M002687 2.2e-55 219.9 433 42.3
Zm00001d020947 Zea mays B73 HOM04x5M002570 ORTHO04x5M002687 2.9e-55 219.5 433 42.0
Zm00007a00035265 Zea mays B104 HOM04x5M002570 ORTHO04x5M002687 2.9e-55 219.5 433 42.0
Bradi3g40060 Brachypodium distachyon HOM04x5M002570 ORTHO04x5M002687 3.8e-55 219.2 572 58.4
Zjn_sc00015.1.g05520.1.am.mk Zoysia japonica ssp. nagirizaki HOM04x5M002412 ORTHO04x5M002551 4.2e-54 215.7 725 43.6
Sobic.002G248600 Sorghum bicolor HOM04x5M002570 ORTHO04x5M002687 5.5e-54 215.3 439 54.4
Seita.2G254700 Setaria italica HOM04x5M002570 ORTHO04x5M002687 9.4e-54 214.5 427 53.6
HORVU5Hr1G073540 Hordeum vulgare HOM04x5M002570 ORTHO04x5M002687 1.0e-52 211.1 436 41.3
HORVU5Hr1G073580 Hordeum vulgare HOM04x5M002570 ORTHO04x5M002687 1.0e-52 211.1 436 41.3
TraesCS5B02G266200 Triticum aestivum HOM04x5M002570 ORTHO04x5M002687 2.3e-52 209.9 432 39.6
TRITD5Bv1G149570 Triticum turgidum HOM04x5M002570 ORTHO04x5M002687 2.3e-52 209.9 432 39.6
TraesCS5D02G274400 Triticum aestivum HOM04x5M002570 ORTHO04x5M002687 4.0e-52 209.1 431 38.3
TraesCS5A02G266600 Triticum aestivum HOM04x5M002570 ORTHO04x5M002687 3.4e-51 206.1 434 40.8
Misin04G229900 Miscanthus sinensis HOM04x5M002570 ORTHO04x5M002687 7.5e-51 204.9 429 54.1
MisinT266000 Miscanthus sinensis HOM04x5M002570 ORTHO04x5M002687 1.3e-50 204.1 383 56.9
TRITD7Av1G092980 Triticum turgidum HOM04x5M002570 ORTHO04x5M002687 1.4e-49 200.7 464 66.4
Zm00008a003238 Zea mays PH207 HOM04x5M002570 ORTHO04x5M002687 1.4e-49 200.7 462 48.1
Pgl_GLEAN_10002113 Cenchrus americanus HOM04x5M002570 ORTHO04x5M002687 2.4e-49 199.9 486 42.4
Sspon.02G0037080-3D Saccharum spontaneum HOM04x5M002570 ORTHO04x5M002687 2.7e-48 196.4 436 55.3
Ma08_g26310 Musa acuminata HOM04x5M002570 ORTHO04x5M002687 7.7e-48 194.9 394 41.9
ASH_gene16039 Apostasia shenzhenica HOM04x5M002570 ORTHO04x5M002687 7.2e-46 188.3 437 39.1
Ma09_g12020 Musa acuminata HOM04x5M002570 ORTHO04x5M002687 9.5e-46 188.0 441 47.4
p5.00_sc00037_p0129 Elaeis guineensis HOM04x5M002570 ORTHO04x5M002687 2.1e-45 186.8 499 47.5
OsR498G0917730800.01 Oryza sativa ssp. indica HOM04x5M002570 ORTHO04x5M002687 2.8e-45 186.4 553 51.7
Sspon.02G0037080-2C Saccharum spontaneum HOM04x5M002570 ORTHO04x5M002687 4.7e-45 185.7 380 58.9
Ma09_g18710 Musa acuminata HOM04x5M002570 ORTHO04x5M002687 3.0e-44 183.0 474 43.7
TRITD5Av1G160060 Triticum turgidum HOM04x5M002570 ORTHO04x5M002687 3.0e-44 183.0 434 39.4
PH01000150G0150 Phyllostachys edulis HOM04x5M002570 ORTHO04x5M002687 7.5e-43 178.3 289 59.2
CALSI_Maker00032927 Calamus simplicifolius HOM04x5M002570 ORTHO04x5M002687 1.1e-41 174.5 441 51.9
TRITD7Bv1G067710 Triticum turgidum HOM04x5M002570 ORTHO04x5M002687 3.1e-41 172.9 461 63.6
p5.00_sc00096_p0028 Elaeis guineensis HOM04x5M002570 ORTHO04x5M002687 4.1e-41 172.6 449 35.4
Ma09_g28270 Musa acuminata HOM04x5M002570 ORTHO04x5M002687 5.4e-41 172.2 393 41.7
CALSI_Maker00014448 Calamus simplicifolius HOM04x5M002570 ORTHO04x5M002687 2.7e-40 169.9 502 42.4
Sspon.02G0037080-1B Saccharum spontaneum HOM04x5M002570 ORTHO04x5M002687 7.8e-40 168.3 385 59.7
LOC_Os09g31454 Oryza sativa ssp. japonica HOM04x5M002570 ORTHO04x5M002687 1.3e-39 167.5 373 57.6
p5.00_sc00131_p0015 Elaeis guineensis HOM04x5M002570 ORTHO04x5M002687 2.1e-37 160.2 501 40.7
p5.00_sc00020_p0160 Elaeis guineensis HOM04x5M002570 ORTHO04x5M002687 6.1e-37 158.7 446 30.0
PH01000770G0030 Phyllostachys edulis HOM04x5M002570 ORTHO04x5M002687 4.4e-35 152.5 295 35.9
GSVIVG01001371001 Vitis vinifera HOM04x5M002570 ORTHO04x5M002687 9.8e-35 151.4 424 30.2
Solyc01g073950.2 Solanum lycopersicum HOM04x5M002570 ORTHO04x5M002687 2.4e-33 146.7 449 27.6
CALSI_Maker00038910 Calamus simplicifolius HOM04x5M002570 ORTHO04x5M002687 1.2e-32 144.4 497 33.0
LP030104 Lolium perenne HOM04x5M002570 ORTHO04x5M002687 6.0e-32 142.1 443 46.5
PH01001573G0060 Phyllostachys edulis HOM04x5M002570 ORTHO04x5M002687 1.7e-31 140.6 579 34.0
PEQU_14986 Phalaenopsis equestris HOM04x5M002570 ORTHO04x5M002687 1.7e-31 140.6 438 32.0
Spipo0G0079200 Spirodela polyrhiza HOM04x5M002570 ORTHO04x5M002687 8.6e-31 138.3 179 49.2
OB09G21390 Oryza brachyantha HOM04x5M002570 ORTHO04x5M002687 4.3e-30 136.0 133 60.9
AT3G60110 Arabidopsis thaliana HOM04x5M002570 ORTHO04x5M002687 4.7e-29 132.5 376 28.7
AT2G42150 Arabidopsis thaliana HOM04x5M002570 ORTHO04x5M002687 8.0e-29 131.7 425 27.3
Aco000751 Ananas comosus HOM04x5M002570 ORTHO04x5M002687 6.8e-28 128.6 190 50.0
AT2G44430 Arabidopsis thaliana HOM04x5M002570 ORTHO04x5M002687 2.0e-27 127.1 401 39.7
Potri.001G229300 Populus trichocarpa HOM04x5M002570 ORTHO04x5M002687 5.8e-27 125.6 436 31.9
AT3G57980 Arabidopsis thaliana HOM04x5M002570 ORTHO04x5M002687 8.3e-26 121.7 387 27.6
Spipo12G0037900 Spirodela polyrhiza HOM04x5M002570 ORTHO04x5M002687 1.4e-25 120.9 182 45.1
ATR0693G270 Amborella trichopoda HOM04x5M002570 ORTHO04x5M002687 2.7e-24 116.7 381 27.8
p5.00_sc00154_p0058 Elaeis guineensis HOM04x5M006888 ORTHO04x5M008419 1.3e-23 114.4 379 26.6
Oropetium_20150105_05500 Oropetium thomaeum HOM04x5M002570 ORTHO04x5M002687 1.7e-23 114.0 137 51.8
CALSI_Maker00044427 Calamus simplicifolius HOM04x5M006888 ORTHO04x5M008419 3.1e-20 103.2 375 28.0
Potri.003G212500 Populus trichocarpa HOM04x5M002570 ORTHO04x5M002687 4.0e-20 102.8 438 36.3
ATR0605G388 Amborella trichopoda HOM04x5M002570 ORTHO04x5M002687 5.2e-20 102.4 124 54.8
Pgl_GLEAN_10009993 Cenchrus americanus HOM04x5M002570 ORTHO04x5M002687 1.5e-19 100.9 127 48.8
Solyc10g009160.2 Solanum lycopersicum HOM04x5M006888 ORTHO04x5M008419 1.7e-18 97.4 381 26.0
Potri.004G036900 Populus trichocarpa HOM04x5M006888 ORTHO04x5M008419 8.3e-18 95.1 396 24.5
Potri.001G013600 Populus trichocarpa HOM04x5M002570 ORTHO04x5M002687 3.2e-17 93.2 442 35.5
PAB00018157 Picea abies HOM04x5M002570 ORTHO04x5M002687 1.2e-16 91.3 181 33.7
Zosma54g00430 Zostera marina HOM04x5M002570 ORTHO04x5M002687 2.1e-16 90.5 120 46.7
Spipo14G0058400 Spirodela polyrhiza HOM04x5M006888 ORTHO04x5M008419 3.5e-16 89.7 382 25.4
AT1G61215 Arabidopsis thaliana HOM04x5M006888 ORTHO04x5M008419 1.0e-15 88.2 390 22.6
Zosma16g01780 Zostera marina HOM04x5M002570 ORTHO04x5M002687 1.0e-15 88.2 108 39.8
Pp3c17_1160 Physcomitrium patens HOM04x5M002570 ORTHO04x5M002687 2.3e-15 87.0 129 37.2
Pp3c17_1175 Physcomitrium patens HOM04x5M002570 ORTHO04x5M002687 2.3e-15 87.0 129 37.2
LP000741 Lolium perenne HOM04x5M006888 ORTHO04x5M008419 3.0e-15 86.7 381 23.6
Aco009146 Ananas comosus HOM04x5M006888 ORTHO04x5M008419 8.6e-15 85.1 397 29.2
gene2213 Selaginella moellendorffii HOM04x5M002570 ORTHO04x5M002687 8.6e-15 85.1 113 37.2
gene5260 Selaginella moellendorffii HOM04x5M002570 ORTHO04x5M002687 8.6e-15 85.1 113 37.2
Solyc02g078810.2 Solanum lycopersicum HOM04x5M006888 ORTHO04x5M008419 1.5e-14 84.3 385 23.1
p5.00_sc00259_p0022 Elaeis guineensis HOM04x5M006888 ORTHO04x5M008419 1.6e-13 80.9 103 41.7
p5.00_sc00259_p0021 Elaeis guineensis HOM04x5M006888 ORTHO04x5M008419 1.6e-13 80.9 103 41.7
Bradi1g24580 Brachypodium distachyon HOM04x5M006888 ORTHO04x5M008419 2.8e-13 80.1 380 21.6
CALSI_Maker00044657 Calamus simplicifolius HOM04x5M002570 ORTHO04x5M002687 4.7e-13 79.3 66 57.6
PAB00022580 Picea abies HOM04x5M002570 ORTHO04x5M002687 4.7e-13 79.3 128 36.7
PAB00062047 Picea abies HOM04x5M002570 ORTHO04x5M002687 4.7e-13 79.3 128 36.7
evm.TU.AsparagusV1_03.2223.V1.1 Asparagus officinalis HOM04x5M006888 ORTHO04x5M008419 8.1e-13 78.6 307 24.1
CALSI_Maker00019150 Calamus simplicifolius HOM04x5M006888 ORTHO04x5M008419 1.1e-12 78.2 120 41.7
OB07G24680 Oryza brachyantha HOM04x5M006888 ORTHO04x5M008419 1.4e-12 77.8 384 25.5
Mapoly0032s0025 Marchantia polymorpha HOM04x5M002570 ORTHO04x5M002687 8.9e-12 75.1 127 33.9
Zm00007a00040219 Zea mays B104 HOM04x5M006888 ORTHO04x5M008419 8.9e-12 75.1 126 37.3
PH01003906G0090 Phyllostachys edulis HOM04x5M006888 ORTHO04x5M008419 7.6e-11 72.0 130 35.4
ATR0605G035 Amborella trichopoda HOM04x5M002570 ORTHO04x5M002687 9.9e-11 71.6 87 42.5
Zm00001d006606 Zea mays B73 HOM04x5M006888 ORTHO04x5M000946 9.9e-11 71.6 122 36.9
Zm00007a00010553 Zea mays B104 HOM04x5M006888 ORTHO04x5M008419 9.9e-11 71.6 122 36.9
TraesCS2A02G202700 Triticum aestivum HOM04x5M006888 ORTHO04x5M008419 1.3e-10 71.2 118 37.3
TRITD2Av1G074100 Triticum turgidum HOM04x5M006888 ORTHO04x5M008419 1.3e-10 71.2 118 37.3
Seita.2G354700 Setaria italica HOM04x5M006888 ORTHO04x5M008419 1.7e-10 70.9 121 38.0
TraesCS2B02G229800 Triticum aestivum HOM04x5M006888 ORTHO04x5M008419 1.7e-10 70.9 118 37.3
TraesCS2D02G213000 Triticum aestivum HOM04x5M006888 ORTHO04x5M008419 1.7e-10 70.9 118 37.3
TRITD2Bv1G083420 Triticum turgidum HOM04x5M006888 ORTHO04x5M008419 1.7e-10 70.9 118 37.3
Misin03G324100 Miscanthus sinensis HOM04x5M006888 ORTHO04x5M008419 4.9e-10 69.3 122 36.1
MisinT311500 Miscanthus sinensis HOM04x5M006888 ORTHO04x5M008419 4.9e-10 69.3 122 36.1
Sobic.002G341100 Sorghum bicolor HOM04x5M006888 ORTHO04x5M008419 4.9e-10 69.3 122 36.1
CALSI_Maker00014450 Calamus simplicifolius HOM04x5M002570 ORTHO04x5M002687 6.4e-10 68.9 124 37.9
evm.TU.AsparagusV1_05.3091.V1.1 Asparagus officinalis HOM04x5M010342 ORTHO04x5M002687 1.9e-09 67.4 81 43.2
Oropetium_20150105_14821 Oropetium thomaeum HOM04x5M002570 ORTHO04x5M002687 2.4e-09 67.0 81 64.2
Sspon.02G0005140-2B Saccharum spontaneum HOM04x5M006888 ORTHO04x5M008419 2.4e-09 67.0 122 35.2
Sspon.02G0005140-1A Saccharum spontaneum HOM04x5M006888 ORTHO04x5M008419 2.4e-09 67.0 122 35.2
Oropetium_20150105_20233 Oropetium thomaeum HOM04x5M002570 ORTHO04x5M002687 7.1e-09 65.5 43 65.1
Zm00007a00029927 Zea mays B104 HOM04x5M002570 ORTHO04x5M002687 2.3e-07 60.5 130 34.6
Zm00008a029109 Zea mays PH207 HOM04x5M006888 ORTHO04x5M008419 2.3e-07 60.5 112 34.8
Zm00001d021810 Zea mays B73 HOM04x5M000354 ORTHO04x5M008419 3.0e-07 60.1 134 33.6
Solyc01g006470.1 Solanum lycopersicum HOM04x5M002570 ORTHO04x5M002687 3.9e-07 59.7 105 28.6
Spipo12G0037800 Spirodela polyrhiza HOM04x5M002570 ORTHO04x5M002687 1.1e-06 58.2 92 46.7
LOC_Os07g37800 Oryza sativa ssp. japonica HOM04x5M006888 ORTHO04x5M008419 2.5e-06 57.0 110 33.6
CALSI_Maker00044662 Calamus simplicifolius HOM04x5M002570 ORTHO04x5M002687 3.3e-06 56.6 96 44.8
PH01000363G0270 Phyllostachys edulis HOM04x5M006888 ORTHO04x5M002431 4.3e-06 56.2 104 32.7
Zjn_sc00001.1.g06600.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M006888 ORTHO04x5M008419 4.3e-06 56.2 55 49.1
Zjn_sc00008.1.g10910.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M006888 ORTHO04x5M008419 4.3e-06 56.2 55 47.3
Spipo0G0079100 Spirodela polyrhiza HOM04x5M002570 ORTHO04x5M002687 5.6e-06 55.8 43 58.1

Amborella trichopoda (3 genes)
Ananas comosus (2 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (5 genes)
Asparagus officinalis (2 genes)
Brachypodium distachyon (3 genes)
Calamus simplicifolius (8 genes)
Cenchrus americanus (2 genes)
Chlamydomonas reinhardtii (0 genes)
Elaeis guineensis (7 genes)
Hordeum vulgare (3 genes)
Lolium perenne (3 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (0 genes)
Miscanthus sinensis (6 genes)
Musa acuminata (4 genes)
Oropetium thomaeum (3 genes)
Oryza brachyantha (3 genes)
Oryza sativa ssp. indica (2 genes)
Oryza sativa ssp. japonica (3 genes)
Phalaenopsis equestris (1 genes)
Phyllostachys edulis (6 genes)
Physcomitrium patens (2 genes)
Picea abies (3 genes)
Populus trichocarpa (4 genes)
Saccharum spontaneum (7 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (3 genes)
Solanum lycopersicum (4 genes)
Sorghum bicolor (3 genes)
Spirodela polyrhiza (5 genes)
Triticum aestivum (9 genes)
Triticum turgidum (6 genes)
Vitis vinifera (1 genes)
Zea mays B73 (4 genes)
Zea mays B104 (5 genes)
Zea mays PH207 (3 genes)
Zostera marina (2 genes)
Zoysia japonica ssp. nagirizaki (4 genes)

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