Interactive Phylogenetics Module

Gene Id
LOC_Os08g29730

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
LOC_Os08g29730 Oryza sativa ssp. japonica HOM04x5M005105 ORTHO04x5M006327 5.0e-238 826.2 486 100.0
OsR498G0815981900.01 Oryza sativa ssp. indica HOM04x5M005105 ORTHO04x5M006327 6.4e-225 782.7 460 100.0
OB08G21390 Oryza brachyantha HOM04x5M005105 ORTHO04x5M006327 2.7e-199 697.6 465 90.1
PH01003461G0180 Phyllostachys edulis HOM04x5M005105 ORTHO04x5M006327 4.3e-189 663.7 495 82.2
Sspon.06G0022070-3D Saccharum spontaneum HOM04x5M005105 ORTHO04x5M006327 5.3e-187 656.8 492 82.1
Misin13G086500 Miscanthus sinensis HOM04x5M005105 ORTHO04x5M006327 1.0e-182 642.5 491 78.0
Misin07G315900 Miscanthus sinensis HOM04x5M005105 ORTHO04x5M006327 3.1e-179 630.9 510 74.9
TraesCS7D02G287000 Triticum aestivum HOM04x5M005105 ORTHO04x5M006327 1.3e-172 609.0 481 74.2
LP023916 Lolium perenne HOM04x5M005105 ORTHO04x5M006327 6.9e-171 603.2 468 73.9
TRITD7Bv1G081380 Triticum turgidum HOM04x5M005105 ORTHO04x5M006327 9.1e-171 602.8 481 73.6
TraesCS7A02G291900 Triticum aestivum HOM04x5M005105 ORTHO04x5M006327 2.0e-170 601.7 470 74.5
TraesCS7B02G196700 Triticum aestivum HOM04x5M005105 ORTHO04x5M006327 7.7e-170 599.7 481 73.4
Bradi3g34800 Brachypodium distachyon HOM04x5M005105 ORTHO04x5M006327 2.5e-168 594.7 470 73.2
Oropetium_20150105_02383 Oropetium thomaeum HOM04x5M005105 ORTHO04x5M006327 1.9e-160 568.5 468 76.5
Zjn_sc00123.1.g00470.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M005105 ORTHO04x5M006327 1.4e-158 562.4 466 76.4
Sspon.06G0022070-2C Saccharum spontaneum HOM04x5M005105 ORTHO04x5M006327 3.9e-158 560.8 470 72.8
Sspon.06G0022070-1B Saccharum spontaneum HOM04x5M005105 ORTHO04x5M006327 2.6e-157 558.1 470 72.1
Zm00007a00037257 Zea mays B104 HOM04x5M005105 ORTHO04x5M006327 1.1e-155 552.7 429 79.5
Zm00008a003831 Zea mays PH207 HOM04x5M005105 ORTHO04x5M006327 5.3e-155 550.4 429 79.0
Zjn_sc00015.1.g00070.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M005105 ORTHO04x5M006327 2.2e-153 545.0 408 76.2
Zm00001d032270 Zea mays B73 HOM04x5M005105 ORTHO04x5M006327 8.5e-153 543.1 379 80.5
Pgl_GLEAN_10034464 Cenchrus americanus HOM04x5M005105 ORTHO04x5M006327 1.5e-152 542.3 492 71.7
Sobic.007G119200 Sorghum bicolor HOM04x5M005105 ORTHO04x5M006327 6.3e-148 526.9 502 68.7
Seita.6G133500 Setaria italica HOM04x5M005105 ORTHO04x5M006327 2.2e-140 501.9 468 71.8
evm.TU.AsparagusV1_01.397.V1.1 Asparagus officinalis HOM04x5M005105 ORTHO04x5M006327 1.2e-122 443.0 455 60.0
PH01003563G0170 Phyllostachys edulis HOM04x5M005105 ORTHO04x5M006327 2.1e-119 432.2 329 77.8
Ma03_g17150 Musa acuminata HOM04x5M005105 ORTHO04x5M006327 3.2e-115 418.3 381 61.9
Ma09_g05290 Musa acuminata HOM04x5M005105 ORTHO04x5M006327 1.6e-114 416.0 466 57.1
Aco006814 Ananas comosus HOM04x5M005105 ORTHO04x5M006327 1.2e-111 406.4 469 61.8
ASH_gene3012 Apostasia shenzhenica HOM04x5M005105 ORTHO04x5M006327 1.2e-111 406.4 464 52.6
Potri.002G165500 Populus trichocarpa HOM04x5M005105 ORTHO04x5M006327 5.4e-107 391.0 411 56.4
p5.00_sc00018_p0052 Elaeis guineensis HOM04x5M005105 ORTHO04x5M006327 4.6e-106 387.9 367 66.2
CALSI_Maker00041268 Calamus simplicifolius HOM04x5M005105 ORTHO04x5M006327 1.4e-102 376.3 572 46.0
Spipo8G0043900 Spirodela polyrhiza HOM04x5M005105 ORTHO04x5M006327 2.2e-100 369.0 442 52.9
Potri.014G091300 Populus trichocarpa HOM04x5M005105 ORTHO04x5M006327 2.4e-99 365.5 411 55.0
Solyc01g095210.2 Solanum lycopersicum HOM04x5M005105 ORTHO04x5M006327 4.2e-99 364.8 483 50.1
ATR1093G009 Amborella trichopoda HOM04x5M005105 ORTHO04x5M006327 1.4e-94 349.7 463 51.2
p5.00_sc00059_p0145 Elaeis guineensis HOM04x5M005105 ORTHO04x5M006327 6.9e-94 347.4 507 47.9
Zosma71g00370 Zostera marina HOM04x5M005105 ORTHO04x5M006327 9.9e-93 343.6 415 52.3
GSVIVG01027009001 Vitis vinifera HOM04x5M005105 ORTHO04x5M006327 1.4e-86 323.2 396 53.0
Mapoly0053s0042 Marchantia polymorpha HOM04x5M005105 ORTHO04x5M006327 3.9e-81 305.1 428 47.0
AT2G46180 Arabidopsis thaliana HOM04x5M005105 ORTHO04x5M006327 1.3e-76 290.0 488 43.2
AT3G61570 Arabidopsis thaliana HOM04x5M005105 ORTHO04x5M006327 2.0e-69 266.2 397 43.6
PEQU_13993 Phalaenopsis equestris HOM04x5M005105 ORTHO04x5M006327 7.4e-64 247.7 317 50.5
Pp3c12_14500 Physcomitrium patens HOM04x5M005105 ORTHO04x5M006327 7.4e-64 247.7 297 50.8
gene15344 Selaginella moellendorffii HOM04x5M005105 ORTHO04x5M006327 1.1e-56 223.8 341 41.9
Pp3c3_18730 Physcomitrium patens HOM04x5M005105 ORTHO04x5M006327 1.3e-55 220.3 301 47.5
gene10039 Selaginella moellendorffii HOM04x5M005105 ORTHO04x5M006327 1.8e-46 189.9 278 43.9
PH01003563G0160 Phyllostachys edulis HOM04x5M005105 ORTHO04x5M006327 5.7e-32 141.7 169 52.7
PAB00026167 Picea abies HOM04x5M005105 ORTHO04x5M006327 4.4e-24 115.5 115 58.3
PAB00062889 Picea abies HOM04x5M005105 ORTHO04x5M006327 4.4e-24 115.5 115 58.3
PEQU_40824 Phalaenopsis equestris HOM04x5M005105 ORTHO04x5M006327 1.8e-17 93.6 94 58.5
MCO16G164 Micromonas commoda HOM04x5M005105 ORTHO04x5M006327 2.0e-08 63.5 182 28.6
Cre12.g495800 Chlamydomonas reinhardtii HOM04x5M005105 ORTHO04x5M006327 9.8e-08 61.2 73 46.6

Amborella trichopoda (1 genes)
Ananas comosus (1 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (2 genes)
Asparagus officinalis (1 genes)
Brachypodium distachyon (1 genes)
Calamus simplicifolius (1 genes)
Cenchrus americanus (1 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (2 genes)
Hordeum vulgare (0 genes)
Lolium perenne (1 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (1 genes)
Miscanthus sinensis (2 genes)
Musa acuminata (2 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (1 genes)
Oryza sativa ssp. indica (1 genes)
Oryza sativa ssp. japonica (1 genes)
Phalaenopsis equestris (2 genes)
Phyllostachys edulis (3 genes)
Physcomitrium patens (2 genes)
Picea abies (2 genes)
Populus trichocarpa (2 genes)
Saccharum spontaneum (3 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (1 genes)
Solanum lycopersicum (1 genes)
Sorghum bicolor (1 genes)
Spirodela polyrhiza (1 genes)
Triticum aestivum (3 genes)
Triticum turgidum (1 genes)
Vitis vinifera (1 genes)
Zea mays B73 (1 genes)
Zea mays B104 (1 genes)
Zea mays PH207 (1 genes)
Zostera marina (1 genes)
Zoysia japonica ssp. nagirizaki (2 genes)

Program Settings