Interactive Phylogenetics Module

Gene Id
LOC_Os01g70320

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
LOC_Os01g70320 Oryza sativa ssp. japonica HOM04x5M001523 ORTHO04x5M001589 2.6e-185 651.4 466 100.0
OB01G51640 Oryza brachyantha HOM04x5M001523 ORTHO04x5M001589 4.2e-175 617.5 466 96.1
TraesCS3B02G476100 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 4.2e-159 564.3 464 90.1
TRITD3Bv1G242080 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 1.2e-158 562.8 468 89.3
TraesCS3D02G435000 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 5.1e-157 557.4 463 91.4
TraesCS3A02G442300 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 7.4e-156 553.5 468 90.8
TRITD3Av1G250250 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 7.4e-156 553.5 468 90.8
Misin05G403900 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 4.8e-155 550.8 466 90.1
Bradi2g59510 Brachypodium distachyon HOM04x5M001523 ORTHO04x5M001589 6.3e-155 550.4 466 90.3
HORVU3Hr1G096450 Hordeum vulgare HOM04x5M001523 ORTHO04x5M001589 6.3e-155 550.4 463 90.5
Sobic.003G412300 Sorghum bicolor HOM04x5M001523 ORTHO04x5M001589 5.0e-152 540.8 466 89.1
LP009590 Lolium perenne HOM04x5M001523 ORTHO04x5M001589 1.9e-151 538.9 466 88.4
Seita.5G438400 Setaria italica HOM04x5M001523 ORTHO04x5M001589 2.5e-151 538.5 463 90.1
Sspon.03G0027700-2C Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 2.8e-147 525.0 466 87.8
Sspon.03G0027700-1P Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 6.7e-141 503.8 455 87.7
Aco015077 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 4.1e-130 468.0 449 82.0
p5.00_sc01766_p0001 Elaeis guineensis HOM04x5M001523 ORTHO04x5M001589 5.7e-124 447.6 470 76.4
p5.00_sc00057_p0063 Elaeis guineensis HOM04x5M001523 ORTHO04x5M001589 1.3e-120 436.4 458 76.6
Misin06G371400 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 2.8e-118 428.7 238 89.9
Zm00007a00002495 Zea mays B104 HOM04x5M001523 ORTHO04x5M001589 1.0e-112 410.2 466 73.8
CALSI_Maker00037144 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 1.5e-111 406.4 525 66.9
ASH_gene19761 Apostasia shenzhenica HOM04x5M001523 ORTHO04x5M001589 2.3e-109 399.1 476 64.5
Oropetium_20150105_09846 Oropetium thomaeum HOM04x5M001523 ORTHO04x5M001589 5.2e-109 397.9 236 85.2
GSVIVG01004935001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 6.4e-107 391.0 443 61.9
Ma04_g00060 Musa acuminata HOM04x5M001523 ORTHO04x5M001589 3.5e-105 385.2 465 72.7
Ma09_g01020 Musa acuminata HOM04x5M001523 ORTHO04x5M001589 5.6e-103 377.9 436 60.8
GSVIVG01008631001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 8.0e-102 374.0 436 67.0
ATR0582G200 Amborella trichopoda HOM04x5M001523 ORTHO04x5M001589 4.0e-101 371.7 449 72.6
Potri.015G104600 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 1.5e-100 369.8 456 65.6
Zjn_sc00009.1.g01850.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001523 ORTHO04x5M001589 2.6e-100 369.0 458 69.7
Pgl_GLEAN_10000952 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 1.7e-99 366.3 402 81.6
Aco006674 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 2.2e-99 365.9 274 67.9
CALSI_Maker00016663 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 4.9e-99 364.8 467 63.8
PEQU_07858 Phalaenopsis equestris HOM04x5M001523 ORTHO04x5M001589 1.4e-98 363.2 243 73.7
CALSI_Maker00018832 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 3.2e-98 362.1 532 56.8
Potri.012G105400 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 5.4e-98 361.3 430 67.7
Potri.001G065800 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 6.6e-96 354.4 238 71.0
Zosma69g00810 Zostera marina HOM04x5M001523 ORTHO04x5M001589 8.6e-96 354.0 464 59.7
Solyc03g118390.2 Solanum lycopersicum HOM04x5M001523 ORTHO04x5M001589 3.3e-95 352.1 447 47.2
Spipo4G0061800 Spirodela polyrhiza HOM04x5M001523 ORTHO04x5M001589 1.8e-93 346.3 238 71.4
Potri.003G164100 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 3.7e-91 338.6 443 58.9
PEQU_08641 Phalaenopsis equestris HOM04x5M001523 ORTHO04x5M001589 1.4e-90 336.7 239 68.2
Zosma27g00300 Zostera marina HOM04x5M001523 ORTHO04x5M001589 6.0e-89 331.3 232 71.1
ATR0706G100 Amborella trichopoda HOM04x5M001523 ORTHO04x5M001589 4.3e-87 325.1 461 63.6
Seita.8G134100 Setaria italica HOM04x5M001523 ORTHO04x5M001589 1.1e-85 320.5 245 64.5
Aco027227 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 3.1e-85 318.9 258 62.4
TraesCS4A02G192600 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 6.8e-85 317.8 235 64.7
TRITD4Av1G154160 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 6.8e-85 317.8 235 64.7
Bradi4g17917 Brachypodium distachyon HOM04x5M001523 ORTHO04x5M001589 1.5e-84 316.6 235 64.3
HORVU4Hr1G023390 Hordeum vulgare HOM04x5M001523 ORTHO04x5M001589 1.5e-84 316.6 235 64.3
AT3G48860 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 2.0e-84 316.2 456 59.6
PH01000002G3240 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 2.0e-84 316.2 237 72.2
OB11G21770 Oryza brachyantha HOM04x5M001523 ORTHO04x5M001589 4.4e-84 315.1 235 63.0
LP038183 Lolium perenne HOM04x5M001523 ORTHO04x5M001589 1.7e-83 313.2 235 64.3
LOC_Os11g31950 Oryza sativa ssp. japonica HOM04x5M001523 ORTHO04x5M001589 2.2e-83 312.8 232 63.8
TraesCS4B02G122700 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 2.2e-83 312.8 235 63.4
TRITD4Bv1G050480 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 2.2e-83 312.8 235 63.4
TraesCS4D02G120700 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 3.8e-83 312.0 235 63.4
Oropetium_20150105_21536 Oropetium thomaeum HOM04x5M001523 ORTHO04x5M001589 6.4e-83 311.2 236 65.7
gene4642 Selaginella moellendorffii HOM04x5M001523 ORTHO04x5M001589 2.4e-82 309.3 242 64.0
gene16812 Selaginella moellendorffii HOM04x5M001523 ORTHO04x5M001589 2.4e-82 309.3 242 64.0
Sobic.005G129400 Sorghum bicolor HOM04x5M001523 ORTHO04x5M001589 5.4e-82 308.1 232 65.5
Misin09G134700 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 9.2e-82 307.4 232 65.5
Misin10G109400 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 1.2e-81 307.0 247 62.3
Zm00001d049273 Zea mays B73 HOM04x5M001523 ORTHO04x5M001589 7.8e-81 304.3 239 63.2
AT5G13260 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 1.7e-80 303.1 231 63.6
Sspon.06G0014630-1A Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 1.7e-80 303.1 229 65.1
Zm00008a012853 Zea mays PH207 HOM04x5M001523 ORTHO04x5M001589 3.9e-80 302.0 253 65.6
Pgl_GLEAN_10004734 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 8.7e-80 300.8 236 63.1
Sspon.06G0014630-3C Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 1.1e-79 300.4 230 65.2
AT4G25070 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 3.3e-79 298.9 238 60.9
AT5G23700 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 3.3e-79 298.9 458 62.7
Pp3c19_9680 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 2.4e-77 292.7 241 62.2
Aco007293 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 1.5e-76 290.0 242 61.2
Potri.005G044600 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 2.6e-76 289.3 241 60.2
Sspon.06G0014630-2B Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 2.2e-75 286.2 283 54.4
Pp3c22_21290 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 2.4e-74 282.7 242 59.5
Pp3c22_21255 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 2.4e-74 282.7 242 59.5
Spipo7G0049800 Spirodela polyrhiza HOM04x5M001523 ORTHO04x5M001589 9.3e-74 280.8 235 61.3
Zm00007a00011305 Zea mays B104 HOM04x5M001523 ORTHO04x5M001589 1.6e-73 280.0 239 60.3
AT4G08630 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 3.5e-73 278.9 240 57.5
Sspon.06G0014630-4D Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 7.3e-71 271.2 226 60.6
evm.TU.AsparagusV1_02.2052.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 1.6e-70 270.0 450 41.6
Ma02_g03510 Musa acuminata HOM04x5M001523 ORTHO04x5M001589 2.8e-70 269.2 226 59.7
Mapoly0101s0059 Marchantia polymorpha HOM04x5M001523 ORTHO04x5M001589 3.8e-67 258.8 240 55.4
Pp3c19_10380 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 4.9e-67 258.5 241 55.6
LP007813 Lolium perenne HOM04x5M001523 ORTHO04x5M001589 4.2e-66 255.4 241 55.2
TraesCS1A02G102200 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 1.6e-65 253.4 240 55.8
TRITD1Av1G041990 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 1.6e-65 253.4 240 55.8
Zm00001d042262 Zea mays B73 HOM04x5M000360 ORTHO04x5M000256 1.6e-65 253.4 290 53.1
Bradi2g36005 Brachypodium distachyon HOM04x5M001523 ORTHO04x5M001589 3.5e-65 252.3 239 54.8
Sspon.07G0013220-2B Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 7.9e-65 251.1 239 53.6
TraesCS1D02G093800 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 2.3e-64 249.6 241 54.4
Misin17G049700 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 3.0e-64 249.2 239 53.6
Sspon.07G0013220-1T Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 5.1e-64 248.4 243 52.7
TraesCS1B02G112600 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 5.1e-64 248.4 240 54.6
TRITD1Bv1G044830 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 5.1e-64 248.4 240 54.6
Seita.3G038900 Setaria italica HOM04x5M001523 ORTHO04x5M001589 1.1e-63 247.3 239 53.6
Misin16G054100 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 5.6e-63 245.0 243 52.3
OsR498G0102629600.01 Oryza sativa ssp. indica HOM04x5M001523 ORTHO04x5M001589 4.8e-62 241.9 258 100.0
Sobic.009G042800 Sorghum bicolor HOM04x5M001523 ORTHO04x5M001589 8.1e-62 241.1 241 52.7
LOC_Os05g05580 Oryza sativa ssp. japonica HOM04x5M001523 ORTHO04x5M001589 4.5e-60 235.3 245 52.7
Zm00007a00006561 Zea mays B104 HOM04x5M001523 ORTHO04x5M001589 5.8e-60 235.0 237 52.3
PH01002160G0270 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 1.3e-59 233.8 341 79.8
Oropetium_20150105_15532 Oropetium thomaeum HOM04x5M001523 ORTHO04x5M001589 4.9e-59 231.9 229 53.7
Sspon.07G0013220-1A Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 2.3e-56 223.0 236 51.3
Zm00008a037492 Zea mays PH207 HOM04x5M001523 ORTHO04x5M001589 2.3e-56 223.0 229 52.0
Pgl_GLEAN_10000785 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 3.0e-56 222.6 158 73.4
GSVIVG01021962001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 4.8e-54 215.3 201 58.7
CALSI_Maker00048189 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 1.8e-53 213.4 225 52.4
Zjn_sc00034.1.g02320.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001523 ORTHO04x5M001589 2.5e-50 203.0 134 76.9
PAB00042674 Picea abies HOM04x5M001523 ORTHO04x5M001589 9.3e-50 201.1 141 70.9
Mapoly0013s0021 Marchantia polymorpha HOM04x5M001523 ORTHO04x5M001589 6.7e-48 194.9 227 45.8
OB05G13160 Oryza brachyantha HOM04x5M001523 ORTHO04x5M001589 1.1e-47 194.1 239 47.3
Zosma5g01040 Zostera marina HOM04x5M001523 ORTHO04x5M001589 2.5e-47 193.0 219 46.6
OsR498G1120235900.01 Oryza sativa ssp. indica HOM04x5M001523 ORTHO04x5M001589 2.8e-46 189.5 153 59.5
evm.TU.AsparagusV1_09.1475.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 2.9e-43 179.5 114 70.2
evm.TU.AsparagusV1_04.1549.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 4.1e-37 159.1 139 59.0
Solyc05g023770.2 Solanum lycopersicum HOM04x5M001523 ORTHO04x5M001589 5.5e-34 148.7 277 54.2
p5.00_sc00211_p0001 Elaeis guineensis HOM04x5M001523 ORTHO04x5M001589 1.8e-32 143.7 174 47.1
Sspon.03G0027700-1B Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 5.1e-32 142.1 90 87.8
Solyc10g037930.1 Solanum lycopersicum HOM04x5M001523 ORTHO04x5M001589 6.7e-32 141.7 146 51.4
evm.TU.AsparagusV1_Unassigned.393.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 3.1e-29 132.9 74 85.1
Zjn_sc00186.1.g00130.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001523 ORTHO04x5M001589 1.5e-28 130.6 203 41.4
PEQU_04259 Phalaenopsis equestris HOM04x5M001523 ORTHO04x5M001589 2.6e-28 129.8 117 59.0
OsR498G0509736400.01 Oryza sativa ssp. indica HOM04x5M001523 ORTHO04x5M001589 7.2e-26 121.7 109 58.7
PH01002160G0250 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 6.7e-24 115.2 58 89.7
Pgl_GLEAN_10003497 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 3.3e-23 112.8 117 53.8
Aco021763 Ananas comosus HOM04x5M001523 ORTHO04x5M009652 2.4e-21 106.7 72 68.1
ASH_gene8570 Apostasia shenzhenica HOM04x5M001523 ORTHO04x5M001589 1.0e-19 101.3 101 53.5
Cre03.g161578 Chlamydomonas reinhardtii HOM04x5M001523 ORTHO04x5M001589 6.1e-17 92.0 245 29.0
PAB00048619 Picea abies HOM04x5M001523 ORTHO04x5M001589 8.8e-16 88.2 107 48.6
MCO12G428 Micromonas commoda HOM04x5M001523 ORTHO04x5M001589 2.8e-14 83.2 139 36.7
PAB00006093 Picea abies HOM04x5M001523 ORTHO04x5M001589 2.4e-13 80.1 60 58.3
Aco028088 Ananas comosus HOM04x5M000382 ORTHO04x5M000270 3.1e-13 79.7 69 55.1
PEQU_07861 Phalaenopsis equestris HOM04x5M001523 ORTHO04x5M001589 3.8e-11 72.8 98 52.0
GSVIVG01021965001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 2.1e-09 67.0 37 81.1
PH01083440G0010 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 1.0e-08 64.7 50 60.0
p5.00_sc00211_p0002 Elaeis guineensis HOM04x5M001523 ORTHO04x5M016727 3.4e-07 59.7 94 45.7
ASH_gene8524 Apostasia shenzhenica HOM04x5M001523 ORTHO04x5M001589 4.8e-06 55.8 37 62.2

Amborella trichopoda (2 genes)
Ananas comosus (6 genes)
Apostasia shenzhenica (3 genes)
Arabidopsis thaliana (5 genes)
Asparagus officinalis (4 genes)
Brachypodium distachyon (3 genes)
Calamus simplicifolius (4 genes)
Cenchrus americanus (4 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (4 genes)
Hordeum vulgare (2 genes)
Lolium perenne (3 genes)
Marchantia polymorpha (2 genes)
Micromonas commoda (1 genes)
Miscanthus sinensis (6 genes)
Musa acuminata (3 genes)
Oropetium thomaeum (3 genes)
Oryza brachyantha (3 genes)
Oryza sativa ssp. indica (3 genes)
Oryza sativa ssp. japonica (3 genes)
Phalaenopsis equestris (4 genes)
Phyllostachys edulis (4 genes)
Physcomitrium patens (4 genes)
Picea abies (3 genes)
Populus trichocarpa (5 genes)
Saccharum spontaneum (10 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (3 genes)
Solanum lycopersicum (3 genes)
Sorghum bicolor (3 genes)
Spirodela polyrhiza (2 genes)
Triticum aestivum (9 genes)
Triticum turgidum (6 genes)
Vitis vinifera (4 genes)
Zea mays B73 (2 genes)
Zea mays B104 (3 genes)
Zea mays PH207 (2 genes)
Zostera marina (3 genes)
Zoysia japonica ssp. nagirizaki (3 genes)

Program Settings