Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco006549	Ananas comosus	HOM04x5M005865	ORTHO04x5M006741	4.8e-120	434.1	298	100.0
CALSI_Maker00014573	Calamus simplicifolius	HOM04x5M005865	ORTHO04x5M006741	6.2e-51	204.5	217	57.1
Ma03_g29120	Musa acuminata	HOM04x5M005865	ORTHO04x5M006741	1.1e-42	177.2	122	75.4
p5.00_sc00005_p0251	Elaeis guineensis	HOM04x5M005865	ORTHO04x5M006741	1.2e-41	173.7	199	54.3
GSVIVG01029313001	Vitis vinifera	HOM04x5M005865	ORTHO04x5M006741	1.2e-41	173.7	119	76.5
evm.TU.AsparagusV1_05.3529.V1.1	Asparagus officinalis	HOM04x5M005865	ORTHO04x5M006741	2.2e-40	169.5	96	86.5
OB02G15000	Oryza brachyantha	HOM04x5M005865	ORTHO04x5M006741	4.2e-39	165.2	102	78.4
LOC_Os02g07920	Oryza sativa ssp. japonica	HOM04x5M005865	ORTHO04x5M006741	4.2e-39	165.2	102	78.4
OsR498G0203073000.01	Oryza sativa ssp. indica	HOM04x5M005865	ORTHO04x5M006741	4.2e-39	165.2	102	78.4
ASH_gene3226	Apostasia shenzhenica	HOM04x5M005865	ORTHO04x5M006741	5.4e-39	164.9	378	38.4
Sspon.04G0028540-1B	Saccharum spontaneum	HOM04x5M005865	ORTHO04x5M006741	2.7e-38	162.5	129	65.9
PEQU_20397	Phalaenopsis equestris	HOM04x5M005865	ORTHO04x5M006741	4.6e-38	161.8	308	39.0
HORVU6Hr1G030950	Hordeum vulgare	HOM04x5M005865	ORTHO04x5M006741	6.0e-38	161.4	109	73.4
HORVU6Hr1G030930	Hordeum vulgare	HOM04x5M005865	ORTHO04x5M006741	6.0e-38	161.4	109	73.4
TraesCS6B02G181500	Triticum aestivum	HOM04x5M005865	ORTHO04x5M006741	6.0e-38	161.4	109	73.4
TRITD6Bv1G067830	Triticum turgidum	HOM04x5M005865	ORTHO04x5M006741	6.0e-38	161.4	109	73.4
Sobic.004G060600	Sorghum bicolor	HOM04x5M005865	ORTHO04x5M006741	7.8e-38	161.0	129	65.1
Pgl_GLEAN_10027830	Cenchrus americanus	HOM04x5M005865	ORTHO04x5M006741	1.0e-37	160.6	102	75.5
Seita.1G067700	Setaria italica	HOM04x5M005865	ORTHO04x5M006741	1.3e-37	160.2	102	75.5
TraesCS6A02G153800	Triticum aestivum	HOM04x5M005865	ORTHO04x5M006741	1.3e-37	160.2	102	76.5
TRITD6Av1G058510	Triticum turgidum	HOM04x5M005865	ORTHO04x5M006741	1.3e-37	160.2	102	76.5
Zm00001d015433	Zea mays B73	HOM04x5M005865	ORTHO04x5M006741	1.7e-37	159.8	153	59.5
Zm00007a00003153	Zea mays B104	HOM04x5M005865	ORTHO04x5M006741	1.7e-37	159.8	153	59.5
Zm00008a021068	Zea mays PH207	HOM04x5M005865	ORTHO04x5M006741	1.7e-37	159.8	153	59.5
PAB00041179	Picea abies	HOM04x5M005865	ORTHO04x5M006741	2.3e-37	159.5	95	82.1
Potri.006G075000	Populus trichocarpa	HOM04x5M005865	ORTHO04x5M006741	2.3e-37	159.5	119	69.7
Sspon.04G0028540-2C	Saccharum spontaneum	HOM04x5M005865	ORTHO04x5M006741	3.9e-37	158.7	157	58.0
ATR0626G368	Amborella trichopoda	HOM04x5M005865	ORTHO04x5M006741	5.1e-37	158.3	160	55.6
Misin07G058200	Miscanthus sinensis	HOM04x5M005865	ORTHO04x5M006741	6.6e-37	157.9	153	58.8
Zm00008a018687	Zea mays PH207	HOM04x5M005865	ORTHO04x5M006741	6.6e-37	157.9	147	59.2
TraesCS6D02G143300	Triticum aestivum	HOM04x5M005865	ORTHO04x5M006741	1.1e-36	157.1	161	56.5
Sspon.04G0028540-3D	Saccharum spontaneum	HOM04x5M005865	ORTHO04x5M006741	1.5e-36	156.8	159	57.2
PH01000917G0280	Phyllostachys edulis	HOM04x5M005865	ORTHO04x5M006741	1.9e-36	156.4	100	77.0
Bradi3g05640	Brachypodium distachyon	HOM04x5M005865	ORTHO04x5M006741	2.5e-36	156.0	167	55.7
Misin08G057700	Miscanthus sinensis	HOM04x5M005865	ORTHO04x5M006741	3.3e-36	155.6	153	57.5
Zosma58g00350	Zostera marina	HOM04x5M005865	ORTHO04x5M006741	4.3e-36	155.2	158	56.3
Zm00001d053762	Zea mays B73	HOM04x5M005865	ORTHO04x5M006741	7.3e-36	154.5	170	53.5
Zm00007a00047405	Zea mays B104	HOM04x5M005865	ORTHO04x5M006741	7.3e-36	154.5	170	53.5
AT2G19270	Arabidopsis thaliana	HOM04x5M005865	ORTHO04x5M006741	2.4e-34	149.4	137	63.5
Zjn_sc00037.1.g03360.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005865	ORTHO04x5M006741	2.4e-34	149.4	161	57.1
LP008493	Lolium perenne	HOM04x5M005865	ORTHO04x5M006741	7.6e-33	144.4	166	51.8
Mapoly0001s0081	Marchantia polymorpha	HOM04x5M005865	ORTHO04x5M006741	5.6e-28	128.3	170	45.9
Pp3c15_6280	Physcomitrium patens	HOM04x5M005865	ORTHO04x5M006741	4.8e-27	125.2	106	62.3
gene2692	Selaginella moellendorffii	HOM04x5M005865	ORTHO04x5M006741	4.8e-27	125.2	108	60.2
gene6403	Selaginella moellendorffii	HOM04x5M005865	ORTHO04x5M006741	1.1e-26	124.0	108	59.3
Oropetium_20150105_18353	Oropetium thomaeum	HOM04x5M005865	ORTHO04x5M006741	4.8e-19	98.6	101	53.5
Spipo5G0002400	Spirodela polyrhiza	HOM04x5M005865	ORTHO04x5M006741	1.7e-16	90.1	52	84.6
Solyc09g055850.2	Solanum lycopersicum	HOM04x5M005865	ORTHO04x5M006741	1.1e-15	87.4	54	83.3
Spipo5G0002500	Spirodela polyrhiza	HOM04x5M005865	ORTHO04x5M006741	1.8e-13	80.1	79	57.0
PH01000608G0310	Phyllostachys edulis	HOM04x5M005865	ORTHO04x5M006741	2.4e-10	69.7	56	57.1
Solyc09g055870.2	Solanum lycopersicum	HOM04x5M005865	ORTHO04x5M006741	3.1e-10	69.3	109	43.1
Cre06.g278258	Chlamydomonas reinhardtii	HOM04x5M005865	ORTHO04x5M006741	2.2e-08	63.2	100	41.0

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment