Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco000537	Ananas comosus	HOM04x5M000771	ORTHO04x5M001898	1.8e-62	241.1	123	100.0
Ma05_g31540	Musa acuminata	HOM04x5M000771	ORTHO04x5M001898	4.1e-19	97.1	128	46.1
Ma08_g02440	Musa acuminata	HOM04x5M000771	ORTHO04x5M001898	1.2e-18	95.5	128	45.3
Spipo23G0024400	Spirodela polyrhiza	HOM04x5M000771	ORTHO04x5M001898	2.0e-18	94.7	128	45.3
evm.TU.AsparagusV1_02.177.V1.1	Asparagus officinalis	HOM04x5M000771	ORTHO04x5M001898	1.3e-17	92.0	129	45.0
ASH_gene18755	Apostasia shenzhenica	HOM04x5M000771	ORTHO04x5M001898	2.9e-17	90.9	129	43.4
Ma10_g06130	Musa acuminata	HOM04x5M000771	ORTHO04x5M001898	2.9e-17	90.9	128	43.0
AT3G63270	Arabidopsis thaliana	HOM04x5M000771	ORTHO04x5M001898	1.1e-16	89.0	111	46.8
CALSI_Maker00033564	Calamus simplicifolius	HOM04x5M000771	ORTHO04x5M001898	1.5e-16	88.6	128	43.0
PH01001519G0160	Phyllostachys edulis	HOM04x5M000771	ORTHO04x5M001898	1.5e-16	88.6	117	44.4
CALSI_Maker00021468	Calamus simplicifolius	HOM04x5M000771	ORTHO04x5M001898	1.9e-16	88.2	111	46.8
LP013169	Lolium perenne	HOM04x5M000771	ORTHO04x5M001898	4.2e-16	87.0	111	47.7
PAB00061025	Picea abies	HOM04x5M000771	ORTHO04x5M001898	4.2e-16	87.0	111	47.7
LOC_Os07g07880	Oryza sativa ssp. japonica	HOM04x5M000771	ORTHO04x5M001898	5.5e-16	86.7	111	47.7
OsR498G0713608800.01	Oryza sativa ssp. indica	HOM04x5M000771	ORTHO04x5M001898	5.5e-16	86.7	111	47.7
Zm00001d048620	Zea mays B73	HOM04x5M000771	ORTHO04x5M001898	7.2e-16	86.3	117	42.7
Zm00007a00019804	Zea mays B104	HOM04x5M000771	ORTHO04x5M001898	7.2e-16	86.3	117	42.7
Zm00008a014872	Zea mays PH207	HOM04x5M000771	ORTHO04x5M001898	7.2e-16	86.3	117	42.7
PH01001689G0010	Phyllostachys edulis	HOM04x5M000771	ORTHO04x5M001898	9.4e-16	85.9	111	46.8
Sspon.06G0018850-2B	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	9.4e-16	85.9	111	44.1
Sspon.06G0018850-1P	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	9.4e-16	85.9	111	44.1
TRITD2Av1G127480	Triticum turgidum	HOM04x5M000771	ORTHO04x5M001898	9.4e-16	85.9	111	46.8
TRITD2Bv1G104890	Triticum turgidum	HOM04x5M000771	ORTHO04x5M001898	9.4e-16	85.9	111	46.8
Pgl_GLEAN_10025725	Cenchrus americanus	HOM04x5M000771	ORTHO04x5M001898	1.6e-15	85.1	128	40.6
PH01000288G0710	Phyllostachys edulis	HOM04x5M000771	ORTHO04x5M001898	1.6e-15	85.1	111	45.0
Zm00001d038377	Zea mays B73	HOM04x5M000771	ORTHO04x5M001898	1.6e-15	85.1	128	40.6
Zm00007a00015265	Zea mays B104	HOM04x5M000771	ORTHO04x5M001898	1.6e-15	85.1	128	40.6
ATR0113G005	Amborella trichopoda	HOM04x5M000771	ORTHO04x5M001898	2.1e-15	84.7	124	40.3
LP010835	Lolium perenne	HOM04x5M000771	ORTHO04x5M001898	2.7e-15	84.3	111	45.9
Sspon.06G0015460-2B	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	2.7e-15	84.3	111	43.2
Sspon.06G0018850-1A	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	2.7e-15	84.3	111	43.2
Sspon.06G0015460-3D	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	2.7e-15	84.3	111	43.2
ATR0665G491	Amborella trichopoda	HOM04x5M000771	ORTHO04x5M001898	3.6e-15	84.0	112	45.5
OB07G13660	Oryza brachyantha	HOM04x5M000771	ORTHO04x5M001898	3.6e-15	84.0	111	45.9
Zm00008a025946	Zea mays PH207	HOM04x5M000771	ORTHO04x5M001898	3.6e-15	84.0	132	39.4
LP035983	Lolium perenne	HOM04x5M000771	ORTHO04x5M001898	4.7e-15	83.6	117	42.7
OB11G27870	Oryza brachyantha	HOM04x5M000771	ORTHO04x5M001898	6.1e-15	83.2	117	41.9
PAB00010417	Picea abies	HOM04x5M000771	ORTHO04x5M001898	6.1e-15	83.2	114	44.7
Zjn_sc00096.1.g00290.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M000771	ORTHO04x5M001898	6.1e-15	83.2	117	41.9
LOC_Os11g47650	Oryza sativa ssp. japonica	HOM04x5M000771	ORTHO04x5M001898	8.0e-15	82.8	117	41.0
OsR498G1120765500.01	Oryza sativa ssp. indica	HOM04x5M000771	ORTHO04x5M001898	8.0e-15	82.8	117	41.0
Zm00001d018916	Zea mays B73	HOM04x5M000771	ORTHO04x5M001898	1.0e-14	82.4	111	44.1
Zm00007a00025726	Zea mays B104	HOM04x5M000771	ORTHO04x5M001898	1.0e-14	82.4	111	44.1
Zm00008a026905	Zea mays PH207	HOM04x5M000771	ORTHO04x5M001898	1.0e-14	82.4	111	44.1
Sspon.02G0024340-1A	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	1.4e-14	82.0	111	44.1
Ma09_g07140	Musa acuminata	HOM04x5M000771	ORTHO04x5M001898	1.8e-14	81.6	111	44.1
Spipo2G0015100	Spirodela polyrhiza	HOM04x5M000771	ORTHO04x5M001898	1.8e-14	81.6	111	44.1
GSVIVG01016602001	Vitis vinifera	HOM04x5M000771	ORTHO04x5M001898	1.8e-14	81.6	129	41.9
Sspon.06G0015460-1A	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	2.3e-14	81.3	111	42.3
Zjn_sc00012.1.g06360.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M000771	ORTHO04x5M001898	2.3e-14	81.3	128	39.1
LOC_Os01g62160	Oryza sativa ssp. japonica	HOM04x5M000771	ORTHO04x5M001898	4.0e-14	80.5	126	36.5
PAB00010415	Picea abies	HOM04x5M000771	ORTHO04x5M001898	4.0e-14	80.5	114	43.0
Sspon.07G0023280-1B	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	4.0e-14	80.5	106	42.5
AT3G55350	Arabidopsis thaliana	HOM04x5M000771	ORTHO04x5M001898	5.2e-14	80.1	127	40.9
CALSI_Maker00036595	Calamus simplicifolius	HOM04x5M000771	ORTHO04x5M001898	5.2e-14	80.1	109	43.1
evm.TU.AsparagusV1_03.515.V1.1	Asparagus officinalis	HOM04x5M000771	ORTHO04x5M001898	6.8e-14	79.7	111	44.1
PAB00035296	Picea abies	HOM04x5M000771	ORTHO04x5M001898	6.8e-14	79.7	114	43.0
TraesCS3A02G356500	Triticum aestivum	HOM04x5M000771	ORTHO04x5M001898	6.8e-14	79.7	126	37.3
GSVIVG01025032001	Vitis vinifera	HOM04x5M000771	ORTHO04x5M001898	6.8e-14	79.7	112	44.6
OB01G45350	Oryza brachyantha	HOM04x5M000771	ORTHO04x5M001898	8.8e-14	79.3	126	36.5
OsR498G0102297400.01	Oryza sativa ssp. indica	HOM04x5M000771	ORTHO04x5M001898	8.8e-14	79.3	126	35.7
PH01000374G0160	Phyllostachys edulis	HOM04x5M000771	ORTHO04x5M001898	8.8e-14	79.3	126	36.5
TraesCS3B02G389300	Triticum aestivum	HOM04x5M000771	ORTHO04x5M001898	8.8e-14	79.3	126	37.3
TraesCS3D02G350500	Triticum aestivum	HOM04x5M000771	ORTHO04x5M001898	8.8e-14	79.3	126	37.3
LP001344	Lolium perenne	HOM04x5M000771	ORTHO04x5M001898	1.2e-13	79.0	126	37.3
PAB00061032	Picea abies	HOM04x5M000771	ORTHO04x5M001898	1.2e-13	79.0	111	44.1
Solyc05g054670.2	Solanum lycopersicum	HOM04x5M000771	ORTHO04x5M001898	1.2e-13	79.0	113	45.1
Zjn_sc00040.1.g04690.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M000771	ORTHO04x5M001898	1.2e-13	79.0	128	36.7
Zm00001d005463	Zea mays B73	HOM04x5M000771	ORTHO04x5M001898	1.2e-13	79.0	128	37.5
Zm00007a00035597	Zea mays B104	HOM04x5M000771	ORTHO04x5M001898	1.2e-13	79.0	128	37.5
Solyc11g073090.1	Solanum lycopersicum	HOM04x5M000771	ORTHO04x5M001898	1.5e-13	78.6	121	40.5
PH01000054G1380	Phyllostachys edulis	HOM04x5M000771	ORTHO04x5M001898	2.0e-13	78.2	126	36.5
Sspon.03G0003140-1A	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	2.6e-13	77.8	126	36.5
Sspon.03G0003140-2C	Saccharum spontaneum	HOM04x5M000771	ORTHO04x5M001898	2.6e-13	77.8	126	36.5
ASH_gene7548	Apostasia shenzhenica	HOM04x5M000771	ORTHO04x5M001898	7.5e-13	76.3	112	42.0
CALSI_Maker00013394	Calamus simplicifolius	HOM04x5M000771	ORTHO04x5M001898	1.4e-11	72.0	93	47.3
TraesCS6A02G052500	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	9.1e-11	69.3	110	35.5
LP035489	Lolium perenne	HOM04x5M000005	ORTHO04x5M000202	2.7e-10	67.8	109	36.7
Pp3c11_8260	Physcomitrium patens	HOM04x5M000771	ORTHO04x5M001898	2.2e-09	64.7	126	34.1
TraesCS6A02G052300	Triticum aestivum	HOM04x5M000005	ORTHO04x5M001898	2.2e-09	64.7	110	35.5
TraesCS6B02G070400	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	2.9e-09	64.3	115	33.9
TraesCS7A02G567500	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	3.8e-09	63.9	115	33.9
TraesCS6A02G052200	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	3.8e-09	63.9	110	33.6
TraesCS6B02G070900	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	3.8e-09	63.9	110	33.6
LP033208	Lolium perenne	HOM04x5M000771	ORTHO04x5M001898	1.1e-08	62.4	109	35.8
Bradi4g09631	Brachypodium distachyon	HOM04x5M000005	ORTHO04x5M000202	1.5e-08	62.0	109	31.2
TraesCS6A02G052400	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	1.5e-08	62.0	106	34.0
Bradi4g09648	Brachypodium distachyon	HOM04x5M000005	ORTHO04x5M000202	1.9e-08	61.6	109	31.2
LP038420	Lolium perenne	HOM04x5M000005	ORTHO04x5M000202	1.9e-08	61.6	109	31.2
TraesCS7D02G544500	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	1.9e-08	61.6	110	34.5
TraesCS7D02G436300	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	2.5e-08	61.2	110	34.5
TRITD7Bv1G234120	Triticum turgidum	HOM04x5M000771	ORTHO04x5M001898	3.2e-08	60.8	91	38.5
TraesCS7B02G489900	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	7.2e-08	59.7	110	32.7
TraesCS6B02G069900	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	7.2e-08	59.7	110	30.0
Bradi4g09271	Brachypodium distachyon	HOM04x5M000005	ORTHO04x5M000202	1.2e-07	58.9	109	33.0
TraesCS7D02G525700	Triticum aestivum	HOM04x5M000005	ORTHO04x5M001898	2.7e-07	57.8	109	29.4
TRITD6Av1G010520	Triticum turgidum	HOM04x5M000005	ORTHO04x5M000202	2.7e-07	57.8	110	34.5
TraesCSU02G112000	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	3.6e-07	57.4	109	30.3
TraesCS3B02G554500	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	6.1e-07	56.6	91	35.2
TRITD3Bv1G266330	Triticum turgidum	HOM04x5M000005	ORTHO04x5M000202	6.1e-07	56.6	91	35.2
TraesCS6B02G069400	Triticum aestivum	HOM04x5M000005	ORTHO04x5M000202	8.0e-07	56.2	110	33.6
HORVU6Hr1G010220	Hordeum vulgare	HOM04x5M000005	ORTHO04x5M000202	1.0e-06	55.8	89	34.8
Bradi4g09312	Brachypodium distachyon	HOM04x5M000005	ORTHO04x5M000202	1.4e-06	55.5	109	31.2
TRITD4Av1G252560	Triticum turgidum	HOM04x5M000005	ORTHO04x5M000202	5.2e-06	53.5	114	31.6
TRITD7Bv1G234320	Triticum turgidum	HOM04x5M000771	ORTHO04x5M001898	6.8e-06	53.1	91	34.1
TRITD7Bv1G234350	Triticum turgidum	HOM04x5M000005	ORTHO04x5M001898	6.8e-06	53.1	98	36.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment