Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
AT5G48545	Arabidopsis thaliana	HOM04x5M005583	ORTHO04x5M006686	2.6e-81	303.9	148	100.0
Misin10G098900	Miscanthus sinensis	HOM04x5M005583	ORTHO04x5M006686	1.6e-46	188.3	146	63.0
Potri.002G248800	Populus trichocarpa	HOM04x5M005583	ORTHO04x5M006686	3.6e-46	187.2	144	68.1
PEQU_06779	Phalaenopsis equestris	HOM04x5M005583	ORTHO04x5M006686	2.6e-44	181.0	143	62.2
LOC_Os11g18990	Oryza sativa ssp. japonica	HOM04x5M005583	ORTHO04x5M006686	1.4e-42	175.3	151	59.6
OsR498G1119850500.01	Oryza sativa ssp. indica	HOM04x5M005583	ORTHO04x5M006686	1.4e-42	175.3	151	59.6
ASH_gene11099	Apostasia shenzhenica	HOM04x5M005583	ORTHO04x5M006686	3.2e-42	174.1	147	63.3
HORVU4Hr1G012240	Hordeum vulgare	HOM04x5M005583	ORTHO04x5M006686	3.2e-42	174.1	155	57.4
evm.TU.AsparagusV1_02.1028.V1.1	Asparagus officinalis	HOM04x5M005583	ORTHO04x5M006686	6.0e-41	169.9	141	63.1
Ma06_g13920	Musa acuminata	HOM04x5M005583	ORTHO04x5M006686	1.3e-40	168.7	147	59.2
TraesCS4D02G072500	Triticum aestivum	HOM04x5M005583	ORTHO04x5M006686	3.0e-40	167.5	155	55.5
TraesCS4B02G074000	Triticum aestivum	HOM04x5M005583	ORTHO04x5M006686	3.0e-40	167.5	155	55.5
TRITD4Bv1G024870	Triticum turgidum	HOM04x5M005583	ORTHO04x5M006686	3.0e-40	167.5	155	55.5
Ma10_g16520	Musa acuminata	HOM04x5M005583	ORTHO04x5M006686	1.1e-39	165.6	154	57.8
Solyc06g007590.2	Solanum lycopersicum	HOM04x5M005583	ORTHO04x5M006686	1.2e-38	162.2	140	60.7
OB0046G10060	Oryza brachyantha	HOM04x5M005583	ORTHO04x5M006686	1.4e-37	158.7	141	59.6
LOC_Os12g13120	Oryza sativa ssp. japonica	HOM04x5M005583	ORTHO04x5M006686	1.4e-37	158.7	161	52.8
OsR498G1221165900.01	Oryza sativa ssp. indica	HOM04x5M005583	ORTHO04x5M006686	4.0e-37	157.1	163	51.5
Zosma44g01020	Zostera marina	HOM04x5M005583	ORTHO04x5M006686	1.5e-36	155.2	144	54.9
TraesCS4A02G241100	Triticum aestivum	HOM04x5M005583	ORTHO04x5M006686	2.6e-36	154.5	155	52.3
Misin15G085300	Miscanthus sinensis	HOM04x5M005583	ORTHO04x5M006686	7.6e-36	152.9	161	49.7
Sspon.07G0037780-1D	Saccharum spontaneum	HOM04x5M005583	ORTHO04x5M006686	7.6e-36	152.9	163	49.1
Sobic.008G082900	Sorghum bicolor	HOM04x5M005583	ORTHO04x5M006686	9.9e-36	152.5	160	49.4
Sspon.07G0037780-1P	Saccharum spontaneum	HOM04x5M005583	ORTHO04x5M006686	6.4e-35	149.8	163	48.5
gene30986	Selaginella moellendorffii	HOM04x5M005583	ORTHO04x5M006686	8.3e-35	149.4	116	58.6
Misin14G069200	Miscanthus sinensis	HOM04x5M005583	ORTHO04x5M006686	2.4e-34	147.9	161	49.1
ATR1149G002	Amborella trichopoda	HOM04x5M005583	ORTHO04x5M006686	3.2e-34	147.5	94	74.5
OB12G16250	Oryza brachyantha	HOM04x5M005583	ORTHO04x5M006686	3.2e-34	147.5	122	58.2
Zm00001d024034	Zea mays B73	HOM04x5M005583	ORTHO04x5M006686	3.2e-34	147.5	159	47.2
Pp3c1_40870	Physcomitrium patens	HOM04x5M005583	ORTHO04x5M006686	1.2e-33	145.6	94	70.2
Bradi4g39695	Brachypodium distachyon	HOM04x5M005583	ORTHO04x5M006686	6.6e-32	139.8	98	63.3
Seita.3G091100	Setaria italica	HOM04x5M005583	ORTHO04x5M006686	8.6e-32	139.4	99	61.6
p5.00_sc00034_p0158	Elaeis guineensis	HOM04x5M005583	ORTHO04x5M006686	4.3e-31	137.1	96	68.8
Aco003477	Ananas comosus	HOM04x5M005583	ORTHO04x5M006686	5.8e-28	126.7	73	80.8
Misin09G112300	Miscanthus sinensis	HOM04x5M005583	ORTHO04x5M006686	4.9e-27	123.6	95	60.0
Pgl_GLEAN_10005025	Cenchrus americanus	HOM04x5M005583	ORTHO04x5M006686	1.2e-25	119.0	83	62.7
Zm00007a00034677	Zea mays B104	HOM04x5M005583	ORTHO04x5M006686	1.6e-25	118.6	140	45.7
evm.TU.AsparagusV1_05.638.V1.1	Asparagus officinalis	HOM04x5M005583	ORTHO04x5M006686	5.3e-21	103.6	126	48.4
Zjn_sc00151.1.g00250.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005583	ORTHO04x5M006686	6.0e-17	90.1	117	44.4
MCO06G116	Micromonas commoda	HOM04x5M005583	ORTHO04x5M006686	2.5e-15	84.7	98	42.9
Zjn_sc00052.1.g00020.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005583	ORTHO04x5M006686	2.0e-12	75.1	94	46.8
GSVIVG01002500001	Vitis vinifera	HOM04x5M005583	ORTHO04x5M006686	2.6e-12	74.7	41	90.2
evm.TU.AsparagusV1_09.587.V1.1	Asparagus officinalis	HOM04x5M005583	ORTHO04x5M006686	1.3e-11	72.4	41	87.8
p5.00_sc00006_p0070	Elaeis guineensis	HOM04x5M005583	ORTHO04x5M006686	1.4e-10	68.9	41	70.7
CALSI_Maker00022606	Calamus simplicifolius	HOM04x5M005583	ORTHO04x5M006686	7.1e-10	66.6	152	34.2
TRITD4Av1G179480	Triticum turgidum	HOM04x5M005583	ORTHO04x5M006686	5.1e-08	60.5	41	61.0
p5.00_sc00003_p0431	Elaeis guineensis	HOM04x5M002260	ORTHO04x5M002455	5.6e-07	57.0	149	26.8
PH01003211G0040	Phyllostachys edulis	HOM04x5M005583	ORTHO04x5M006686	1.6e-06	55.5	94	35.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
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