Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 4.9e-252 874.0 450 100.0
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 2.5e-171 605.9 460 67.6
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 6.8e-161 571.2 459 62.7
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 8.1e-154 547.7 464 61.6
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 3.1e-153 545.8 496 57.9
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 1.5e-152 543.5 465 60.9
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 4.4e-152 542.0 476 58.0
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 4.4e-152 542.0 485 57.9
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 9.9e-152 540.8 476 59.9
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 2.2e-151 539.7 505 56.8
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 2.2e-151 539.7 487 57.9
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 2.9e-151 539.3 487 58.1
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 3.8e-151 538.9 469 60.1
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 3.8e-151 538.9 511 56.4
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 4.9e-151 538.5 469 60.3
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 6.4e-151 538.1 508 56.5
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 8.4e-151 537.7 505 56.6
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.4e-150 537.0 493 57.2
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 5.4e-150 535.0 490 57.1
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 1.6e-149 533.5 470 59.6
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 6.0e-149 531.6 484 57.2
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 3.9e-148 528.9 451 63.2
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 5.1e-148 528.5 488 56.6
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 8.7e-148 527.7 487 56.7
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 2.5e-147 526.2 479 57.8
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 5.6e-147 525.0 470 58.5
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 7.3e-147 524.6 473 57.7
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 1.3e-146 523.9 473 56.2
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 2.1e-146 523.1 438 62.1
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 2.8e-146 522.7 488 56.1
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 1.4e-145 520.4 474 57.8
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 2.4e-145 519.6 465 58.3
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 3.1e-145 519.2 484 55.4
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 5.3e-145 518.5 457 59.7
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 9.0e-145 517.7 483 55.3
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 9.0e-145 517.7 464 59.7
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 1.2e-144 517.3 476 55.7
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 1.5e-144 516.9 467 57.6
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 2.0e-144 516.5 476 56.1
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 2.0e-144 516.5 470 59.1
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 3.4e-144 515.8 485 56.9
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 3.4e-144 515.8 475 57.3
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 7.6e-144 514.6 514 53.3
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 2.9e-143 512.7 478 55.4
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 4.9e-143 511.9 471 56.7
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 8.4e-143 511.1 464 55.6
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 1.1e-142 510.8 523 56.6
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 1.9e-142 510.0 514 53.9
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.4e-142 509.6 467 57.0
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 9.3e-142 507.7 467 56.5
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 9.3e-142 507.7 485 55.3
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 1.0e-140 504.2 459 58.6
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 2.3e-140 503.1 494 53.8
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 2.3e-140 503.1 473 56.2
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 3.9e-140 502.3 469 55.9
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 5.1e-140 501.9 484 55.2
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 6.7e-140 501.5 488 54.1
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 7.4e-139 498.0 502 51.8
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 1.3e-138 497.3 464 55.2
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 3.1e-137 492.7 497 53.7
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 3.1e-137 492.7 487 53.2
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 4.0e-137 492.3 459 56.2
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.5e-136 490.3 500 53.2
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 1.5e-136 490.3 561 49.2
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 1.5e-136 490.3 475 54.5
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 1.7e-135 486.9 498 53.2
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 3.8e-135 485.7 555 50.3
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 2.5e-134 483.0 468 57.3
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 1.2e-133 480.7 489 52.4
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 7.9e-133 478.0 484 54.5
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 7.9e-133 478.0 484 54.5
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 1.0e-132 477.6 480 54.0
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 3.0e-132 476.1 589 47.7
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 7.4e-131 471.5 418 59.3
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 7.4e-131 471.5 508 50.4
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 1.6e-130 470.3 483 53.6
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.6e-130 470.3 469 52.9
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 3.1e-129 466.1 478 52.5
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.2e-120 437.6 500 46.6
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 1.1e-118 431.0 489 49.9
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 3.9e-116 422.5 402 55.2
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 1.3e-114 417.5 615 42.9
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.8e-114 416.4 473 48.6
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 3.7e-114 416.0 490 46.9
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.8e-114 415.6 481 48.9
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 8.2e-114 414.8 410 54.4
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 7.4e-107 391.7 334 62.0
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.3e-106 391.0 381 57.0
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 2.2e-103 380.2 385 54.3
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 2.5e-102 376.7 282 69.1
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.1e-101 373.6 313 60.7
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 1.4e-100 370.9 482 42.7
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 5.7e-99 365.5 313 63.3
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 7.4e-99 365.2 425 49.6
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 3.7e-98 362.8 357 54.9
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 2.6e-96 356.7 365 52.9
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 1.3e-95 354.4 338 56.8
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 3.0e-92 343.2 420 46.7
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 5.2e-92 342.4 429 45.7
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 4.4e-91 339.3 447 45.4
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 2.2e-90 337.0 817 31.5
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 7.7e-88 328.6 325 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.3e-87 327.8 448 42.2
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 1.5e-86 324.3 411 46.2
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 5.5e-86 322.4 405 46.7
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.3e-79 301.2 215 69.3
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 3.0e-76 290.0 216 63.9
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 1.7e-74 284.3 217 63.1
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 5.6e-70 269.2 240 58.3
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 2.1e-61 240.7 545 32.7
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 9.2e-57 225.3 560 32.0
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 1.5e-51 208.0 244 47.5
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.0e-51 207.6 180 57.8
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 6.0e-48 196.1 200 54.0
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 4.4e-43 179.9 132 65.9
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 1.1e-41 175.3 103 78.6
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.1e-40 171.0 230 45.7
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 2.4e-36 157.5 148 54.1
Migut.F02088 Erythranthe guttata HOM05D005147 ORTHO05D006132 2.6e-35 154.1 151 53.0
ClCG04G001680 Citrullus lanatus HOM05D005147 ORTHO05D006132 2.2e-34 151.0 147 54.4
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 4.9e-34 149.8 103 68.0
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 1.9e-33 147.9 527 28.1
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.4e-33 147.5 107 69.2
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 4.6e-32 143.3 156 48.7
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.4e-28 131.7 460 27.2
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 2.4e-28 131.0 72 81.9
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 1.2e-27 128.6 259 36.3
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 3.4e-27 127.1 72 81.9
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 1.2e-24 118.6 240 32.1
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.6e-24 116.7 95 56.8
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 1.8e-23 114.8 95 56.8
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 1.0e-18 99.0 83 59.0
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 1.3e-18 98.6 78 59.0
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 6.5e-18 96.3 62 64.5
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 2.5e-17 94.4 83 56.6
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 1.6e-16 91.7 81 54.3
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 4.6e-16 90.1 78 53.8
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 4.6e-16 90.1 81 54.3
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 7.9e-16 89.4 83 53.0
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 1.0e-15 89.0 72 59.7
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 4.3e-14 83.6 65 58.5
Hma1.2p1_1029F.1_g249580 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 4.3e-14 83.6 271 27.7
Hma1.2p1_3112F.1_g332769 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 4.3e-14 83.6 271 27.7
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 6.2e-13 79.7 81 48.1
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 3.1e-12 77.4 58 55.2
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.5e-11 73.6 78 46.2
SHI13697 Sapria himalayana HOM05D005147 ORTHO05D000014 8.4e-10 69.3 59 47.5
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 5.5e-09 66.6 81 43.2
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 2.3e-07 61.2 79 39.2
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 1.5e-06 58.5 67 40.3
Hma1.2p1_0046F.1_g026960 Hydrangea macrophylla HOM05D001563 ORTHO05D001956 1.9e-06 58.2 220 24.5
Solyc02g062920.3 Solanum lycopersicum HOM05D001563 ORTHO05D001956 2.5e-06 57.8 222 24.3
CANSAT54G0937 Cannabis sativa HOM05D005264 ORTHO05D005428 3.3e-06 57.4 67 43.3
CiPaw.05G167900 Carya illinoinensis HOM05D005264 ORTHO05D005428 3.3e-06 57.4 67 43.3
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 4.3e-06 57.0 68 41.2
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 4.3e-06 57.0 68 41.2
Lalb_Chr10g0095091 Lupinus albus HOM05D005264 ORTHO05D005428 4.3e-06 57.0 67 43.3
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 5.7e-06 56.6 67 41.8
PGSC0003DMG400015500 Solanum tuberosum HOM05D001563 ORTHO05D001956 5.7e-06 56.6 222 24.3
Gohir.D07G112100 Gossypium hirsutum HOM05D005264 ORTHO05D005428 7.4e-06 56.2 67 43.3
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 7.4e-06 56.2 95 32.6
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 7.4e-06 56.2 69 37.7
Actinidia36546 Actinidia chinensis HOM05D001563 ORTHO05D001956 9.7e-06 55.8 220 23.2
Oeu007445.5 Olea europaea HOM05D001563 ORTHO05D001956 9.7e-06 55.8 220 23.2
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 9.7e-06 55.8 67 41.8
Psat7g174160 Pisum sativum HOM05D005264 ORTHO05D005428 9.7e-06 55.8 67 40.3
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 9.7e-06 55.8 67 41.8
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 9.7e-06 55.8 67 40.3


User provided reference genes

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